Hb_000317_280

Information

Type -
Description -
Location Contig317: 204032-209889
Sequence    

Annotation

kegg
ID pop:POPTR_0004s14190g
description POPTRDRAFT_556285; hypothetical protein
nr
ID XP_012088425.1
description PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08490 [Jatropha curcas]
swissprot
ID Q9FNN9
description Putative pentatricopeptide repeat-containing protein At5g08490 OS=Arabidopsis thaliana GN=PCMP-E32 PE=3 SV=1
trembl
ID B9H423
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s14190g PE=4 SV=1
Gene Ontology
ID GO:0005739
description pentatricopeptide repeat-containing protein at5g08490

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33390: 208513-208809 , PASA_asmbl_33391: 209411-209719
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_280 0.0 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08490 [Jatropha curcas]
2 Hb_007747_200 0.0725804972 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
3 Hb_000343_130 0.0823654397 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
4 Hb_001338_040 0.0854118937 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
5 Hb_000635_220 0.0913912955 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
6 Hb_001969_090 0.0950668679 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
7 Hb_006846_110 0.0975627979 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
8 Hb_002056_060 0.103739195 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
9 Hb_163145_020 0.1054800114 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
10 Hb_005000_070 0.105951868 - - hypothetical protein POPTR_0012s01650g [Populus trichocarpa]
11 Hb_016901_010 0.1078986731 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
12 Hb_000935_050 0.1079097806 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Jatropha curcas]
13 Hb_000836_080 0.1091073671 - - PREDICTED: pentatricopeptide repeat-containing protein At2g46050, mitochondrial [Jatropha curcas]
14 Hb_001454_190 0.1094099475 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
15 Hb_003687_100 0.1094941242 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
16 Hb_000574_350 0.1105574155 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
17 Hb_000002_050 0.1110904751 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]
18 Hb_005532_060 0.1114069863 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]
19 Hb_007075_050 0.1117431825 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_004993_050 0.1120568023 - - -

Gene co-expression network

sample Hb_000317_280 Hb_000317_280 Hb_007747_200 Hb_007747_200 Hb_000317_280--Hb_007747_200 Hb_000343_130 Hb_000343_130 Hb_000317_280--Hb_000343_130 Hb_001338_040 Hb_001338_040 Hb_000317_280--Hb_001338_040 Hb_000635_220 Hb_000635_220 Hb_000317_280--Hb_000635_220 Hb_001969_090 Hb_001969_090 Hb_000317_280--Hb_001969_090 Hb_006846_110 Hb_006846_110 Hb_000317_280--Hb_006846_110 Hb_000019_130 Hb_000019_130 Hb_007747_200--Hb_000019_130 Hb_007747_200--Hb_006846_110 Hb_007747_200--Hb_000343_130 Hb_000002_050 Hb_000002_050 Hb_007747_200--Hb_000002_050 Hb_016901_010 Hb_016901_010 Hb_007747_200--Hb_016901_010 Hb_000343_130--Hb_000635_220 Hb_000343_130--Hb_016901_010 Hb_002006_090 Hb_002006_090 Hb_000343_130--Hb_002006_090 Hb_000111_360 Hb_000111_360 Hb_000343_130--Hb_000111_360 Hb_000574_350 Hb_000574_350 Hb_001338_040--Hb_000574_350 Hb_002056_060 Hb_002056_060 Hb_001338_040--Hb_002056_060 Hb_001338_040--Hb_007747_200 Hb_000836_080 Hb_000836_080 Hb_001338_040--Hb_000836_080 Hb_000935_050 Hb_000935_050 Hb_001338_040--Hb_000935_050 Hb_003687_100 Hb_003687_100 Hb_000635_220--Hb_003687_100 Hb_163145_020 Hb_163145_020 Hb_000635_220--Hb_163145_020 Hb_000635_220--Hb_007747_200 Hb_000635_220--Hb_006846_110 Hb_001969_090--Hb_007747_200 Hb_000575_150 Hb_000575_150 Hb_001969_090--Hb_000575_150 Hb_003687_240 Hb_003687_240 Hb_001969_090--Hb_003687_240 Hb_010883_090 Hb_010883_090 Hb_001969_090--Hb_010883_090 Hb_000805_020 Hb_000805_020 Hb_001969_090--Hb_000805_020 Hb_131864_040 Hb_131864_040 Hb_006846_110--Hb_131864_040 Hb_003018_190 Hb_003018_190 Hb_006846_110--Hb_003018_190 Hb_000223_150 Hb_000223_150 Hb_006846_110--Hb_000223_150 Hb_002603_160 Hb_002603_160 Hb_006846_110--Hb_002603_160 Hb_008453_090 Hb_008453_090 Hb_006846_110--Hb_008453_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.91168 1.68917 0.329522 0.413069 1.3394 1.446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.65043 2.88382 4.49022 1.66346 0.990297

CAGE analysis