Hb_000317_360

Information

Type -
Description -
Location Contig317: 250578-252280
Sequence    

Annotation

kegg
ID rcu:RCOM_1176830
description zinc finger protein, putative
nr
ID XP_012088388.1
description PREDICTED: GDSL esterase/lipase At5g08460 [Jatropha curcas]
swissprot
ID Q9FNP2
description GDSL esterase/lipase At5g08460 OS=Arabidopsis thaliana GN=At5g08460 PE=2 SV=1
trembl
ID A0A067JN67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25875 PE=4 SV=1
Gene Ontology
ID GO:0016491
description gdsl esterase lipase at5g08460

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_360 0.0 - - PREDICTED: GDSL esterase/lipase At5g08460 [Jatropha curcas]
2 Hb_105328_030 0.2429549968 - - Putative retroelement [Oryza sativa Japonica Group]
3 Hb_080147_100 0.2566384493 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN [Jatropha curcas]
4 Hb_000645_110 0.2590370765 transcription factor TF Family: GRAS PREDICTED: DELLA protein RGL1-like [Jatropha curcas]
5 Hb_006420_090 0.2684744491 - - PREDICTED: zinc finger protein 5 [Jatropha curcas]
6 Hb_085636_010 0.2727126328 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
7 Hb_010320_030 0.2813110005 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
8 Hb_000975_150 0.3015746857 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
9 Hb_026527_020 0.303671662 - - PREDICTED: putative methyltransferase DDB_G0268948 [Jatropha curcas]
10 Hb_001504_120 0.3061024605 - - -
11 Hb_007894_250 0.3105506849 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
12 Hb_000140_160 0.3132916044 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
13 Hb_003052_230 0.3140786877 - - conserved hypothetical protein [Ricinus communis]
14 Hb_021943_030 0.3158249899 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_027472_230 0.3165179584 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
16 Hb_000157_130 0.3186961829 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X2 [Populus euphratica]
17 Hb_024621_030 0.3195731558 - - tetraketide alpha-pyrone reductase 2 [Jatropha curcas]
18 Hb_001268_130 0.3196499979 - - hypothetical protein JCGZ_26837 [Jatropha curcas]
19 Hb_008479_020 0.3208854546 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
20 Hb_001045_050 0.3254023464 transcription factor TF Family: WRKY hypothetical protein POPTR_0001s33560g [Populus trichocarpa]

Gene co-expression network

sample Hb_000317_360 Hb_000317_360 Hb_105328_030 Hb_105328_030 Hb_000317_360--Hb_105328_030 Hb_080147_100 Hb_080147_100 Hb_000317_360--Hb_080147_100 Hb_000645_110 Hb_000645_110 Hb_000317_360--Hb_000645_110 Hb_006420_090 Hb_006420_090 Hb_000317_360--Hb_006420_090 Hb_085636_010 Hb_085636_010 Hb_000317_360--Hb_085636_010 Hb_010320_030 Hb_010320_030 Hb_000317_360--Hb_010320_030 Hb_105328_030--Hb_080147_100 Hb_001504_120 Hb_001504_120 Hb_105328_030--Hb_001504_120 Hb_031527_060 Hb_031527_060 Hb_105328_030--Hb_031527_060 Hb_105328_030--Hb_006420_090 Hb_004460_050 Hb_004460_050 Hb_105328_030--Hb_004460_050 Hb_000805_320 Hb_000805_320 Hb_080147_100--Hb_000805_320 Hb_003073_180 Hb_003073_180 Hb_080147_100--Hb_003073_180 Hb_094437_060 Hb_094437_060 Hb_080147_100--Hb_094437_060 Hb_080147_100--Hb_001504_120 Hb_003750_030 Hb_003750_030 Hb_080147_100--Hb_003750_030 Hb_000645_110--Hb_003073_180 Hb_000645_110--Hb_080147_100 Hb_140049_050 Hb_140049_050 Hb_000645_110--Hb_140049_050 Hb_000209_110 Hb_000209_110 Hb_000645_110--Hb_000209_110 Hb_000157_130 Hb_000157_130 Hb_000645_110--Hb_000157_130 Hb_007101_290 Hb_007101_290 Hb_006420_090--Hb_007101_290 Hb_026527_020 Hb_026527_020 Hb_006420_090--Hb_026527_020 Hb_007317_080 Hb_007317_080 Hb_006420_090--Hb_007317_080 Hb_000300_130 Hb_000300_130 Hb_006420_090--Hb_000300_130 Hb_000836_490 Hb_000836_490 Hb_006420_090--Hb_000836_490 Hb_085636_010--Hb_010320_030 Hb_000359_240 Hb_000359_240 Hb_085636_010--Hb_000359_240 Hb_062135_010 Hb_062135_010 Hb_085636_010--Hb_062135_010 Hb_000496_090 Hb_000496_090 Hb_085636_010--Hb_000496_090 Hb_001369_280 Hb_001369_280 Hb_085636_010--Hb_001369_280 Hb_010320_030--Hb_000359_240 Hb_010320_030--Hb_062135_010 Hb_014556_020 Hb_014556_020 Hb_010320_030--Hb_014556_020 Hb_001377_390 Hb_001377_390 Hb_010320_030--Hb_001377_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.586867 0 0.0354556 0 0.76916
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.307891 2.54261 0.22271 4.59426 0.0825044

CAGE analysis