Hb_000317_370

Information

Type transcription factor
Description TF Family: PHD
Location Contig317: 254339-259445
Sequence    

Annotation

kegg
ID rcu:RCOM_0814500
description DNA binding protein, putative
nr
ID XP_012088391.1
description PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
swissprot
ID Q9C810
description PHD finger protein At1g33420 OS=Arabidopsis thaliana GN=At1g33420 PE=1 SV=1
trembl
ID A0A067JXI4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25876 PE=4 SV=1
Gene Ontology
ID GO:0008270
description phd finger protein at1g33420

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33401: 254220-259497 , PASA_asmbl_33402: 257257-258851 , PASA_asmbl_33403: 255226-255596 , PASA_asmbl_33404: 256900-257099
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_370 0.0 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
2 Hb_002217_170 0.0607086019 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
3 Hb_011618_090 0.0624433778 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
4 Hb_000025_280 0.0633091314 transcription factor TF Family: C3H hypothetical protein JCGZ_07432 [Jatropha curcas]
5 Hb_003835_070 0.0667836563 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
6 Hb_000976_210 0.0694284819 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
7 Hb_000258_160 0.0696012743 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002043_140 0.0696993407 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
9 Hb_000107_490 0.069784599 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
10 Hb_000313_120 0.0707778243 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
11 Hb_033772_030 0.0710207175 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
12 Hb_003370_030 0.0711439971 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
13 Hb_024621_040 0.0728724076 transcription factor TF Family: ERF hypothetical protein L484_014666 [Morus notabilis]
14 Hb_001628_070 0.0729402374 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_003494_020 0.0734664583 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
16 Hb_004586_290 0.0754583892 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
17 Hb_000028_130 0.0762488433 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
18 Hb_007163_120 0.0768091809 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
19 Hb_000614_210 0.0777433373 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
20 Hb_000922_360 0.079467919 - - -

Gene co-expression network

sample Hb_000317_370 Hb_000317_370 Hb_002217_170 Hb_002217_170 Hb_000317_370--Hb_002217_170 Hb_011618_090 Hb_011618_090 Hb_000317_370--Hb_011618_090 Hb_000025_280 Hb_000025_280 Hb_000317_370--Hb_000025_280 Hb_003835_070 Hb_003835_070 Hb_000317_370--Hb_003835_070 Hb_000976_210 Hb_000976_210 Hb_000317_370--Hb_000976_210 Hb_000258_160 Hb_000258_160 Hb_000317_370--Hb_000258_160 Hb_002217_170--Hb_003835_070 Hb_001195_530 Hb_001195_530 Hb_002217_170--Hb_001195_530 Hb_003464_090 Hb_003464_090 Hb_002217_170--Hb_003464_090 Hb_105105_010 Hb_105105_010 Hb_002217_170--Hb_105105_010 Hb_000614_210 Hb_000614_210 Hb_002217_170--Hb_000614_210 Hb_011618_090--Hb_003835_070 Hb_000579_230 Hb_000579_230 Hb_011618_090--Hb_000579_230 Hb_000922_360 Hb_000922_360 Hb_011618_090--Hb_000922_360 Hb_003544_060 Hb_003544_060 Hb_011618_090--Hb_003544_060 Hb_007083_030 Hb_007083_030 Hb_011618_090--Hb_007083_030 Hb_004483_040 Hb_004483_040 Hb_000025_280--Hb_004483_040 Hb_000069_470 Hb_000069_470 Hb_000025_280--Hb_000069_470 Hb_000017_220 Hb_000017_220 Hb_000025_280--Hb_000017_220 Hb_004586_290 Hb_004586_290 Hb_000025_280--Hb_004586_290 Hb_031042_050 Hb_031042_050 Hb_000025_280--Hb_031042_050 Hb_002205_250 Hb_002205_250 Hb_003835_070--Hb_002205_250 Hb_003835_070--Hb_000614_210 Hb_003835_070--Hb_105105_010 Hb_012194_030 Hb_012194_030 Hb_003835_070--Hb_012194_030 Hb_002043_140 Hb_002043_140 Hb_000976_210--Hb_002043_140 Hb_003082_010 Hb_003082_010 Hb_000976_210--Hb_003082_010 Hb_002006_040 Hb_002006_040 Hb_000976_210--Hb_002006_040 Hb_000976_210--Hb_002217_170 Hb_002890_090 Hb_002890_090 Hb_000976_210--Hb_002890_090 Hb_003494_020 Hb_003494_020 Hb_000258_160--Hb_003494_020 Hb_000041_110 Hb_000041_110 Hb_000258_160--Hb_000041_110 Hb_019863_070 Hb_019863_070 Hb_000258_160--Hb_019863_070 Hb_000340_530 Hb_000340_530 Hb_000258_160--Hb_000340_530 Hb_004079_060 Hb_004079_060 Hb_000258_160--Hb_004079_060 Hb_162275_050 Hb_162275_050 Hb_000258_160--Hb_162275_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.0184 46.6919 20.7245 29.0825 27.9147 22.6234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.9712 21.773 33.2734 37.1846 26.7453

CAGE analysis