Hb_000317_390

Information

Type -
Description -
Location Contig317: 266457-270495
Sequence    

Annotation

kegg
ID pop:POPTR_0004s14260g
description POPTRDRAFT_714560; hypothetical protein
nr
ID XP_012088389.1
description PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
swissprot
ID O95562
description Vesicle transport protein SFT2B OS=Homo sapiens GN=SFT2D2 PE=1 SV=1
trembl
ID A0A067JJU3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25878 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vesicle transport protein sft2b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33406: 266625-270490 , PASA_asmbl_33407: 269725-269881
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_390 0.0 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
2 Hb_152784_010 0.0614917114 - - hypothetical protein PRUPE_ppa010913mg [Prunus persica]
3 Hb_000331_200 0.0647249637 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
4 Hb_001318_250 0.066955582 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]
5 Hb_000045_310 0.0673985308 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
6 Hb_004108_070 0.0690801266 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
7 Hb_006693_020 0.0717348045 - - PREDICTED: frataxin, mitochondrial [Gossypium raimondii]
8 Hb_010361_010 0.0720510364 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
9 Hb_118419_010 0.0736883552 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
10 Hb_002343_060 0.0747453962 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
11 Hb_008071_020 0.0771752338 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
12 Hb_026889_030 0.0803138602 - - protein with unknown function [Ricinus communis]
13 Hb_028396_010 0.0804013548 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
14 Hb_055062_020 0.0804843899 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
15 Hb_001124_090 0.0813727523 - - acyl carrier protein, putative [Ricinus communis]
16 Hb_000934_250 0.082093992 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
17 Hb_154948_040 0.0822293264 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
18 Hb_000599_250 0.0829026946 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
19 Hb_001703_060 0.0832975659 - - protein kinase, putative [Ricinus communis]
20 Hb_000221_160 0.0836100862 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]

Gene co-expression network

sample Hb_000317_390 Hb_000317_390 Hb_152784_010 Hb_152784_010 Hb_000317_390--Hb_152784_010 Hb_000331_200 Hb_000331_200 Hb_000317_390--Hb_000331_200 Hb_001318_250 Hb_001318_250 Hb_000317_390--Hb_001318_250 Hb_000045_310 Hb_000045_310 Hb_000317_390--Hb_000045_310 Hb_004108_070 Hb_004108_070 Hb_000317_390--Hb_004108_070 Hb_006693_020 Hb_006693_020 Hb_000317_390--Hb_006693_020 Hb_000638_250 Hb_000638_250 Hb_152784_010--Hb_000638_250 Hb_152784_010--Hb_001318_250 Hb_033594_150 Hb_033594_150 Hb_152784_010--Hb_033594_150 Hb_000103_320 Hb_000103_320 Hb_152784_010--Hb_000103_320 Hb_004696_080 Hb_004696_080 Hb_152784_010--Hb_004696_080 Hb_001703_060 Hb_001703_060 Hb_000331_200--Hb_001703_060 Hb_000331_200--Hb_006693_020 Hb_000331_200--Hb_004108_070 Hb_001140_370 Hb_001140_370 Hb_000331_200--Hb_001140_370 Hb_000221_160 Hb_000221_160 Hb_000331_200--Hb_000221_160 Hb_000934_250 Hb_000934_250 Hb_001318_250--Hb_000934_250 Hb_001124_090 Hb_001124_090 Hb_001318_250--Hb_001124_090 Hb_001318_250--Hb_000103_320 Hb_001016_030 Hb_001016_030 Hb_001318_250--Hb_001016_030 Hb_000566_120 Hb_000566_120 Hb_000045_310--Hb_000566_120 Hb_028396_010 Hb_028396_010 Hb_000045_310--Hb_028396_010 Hb_006573_190 Hb_006573_190 Hb_000045_310--Hb_006573_190 Hb_024650_070 Hb_024650_070 Hb_000045_310--Hb_024650_070 Hb_008071_020 Hb_008071_020 Hb_000045_310--Hb_008071_020 Hb_001931_010 Hb_001931_010 Hb_000045_310--Hb_001931_010 Hb_005731_050 Hb_005731_050 Hb_004108_070--Hb_005731_050 Hb_004108_070--Hb_006693_020 Hb_000815_320 Hb_000815_320 Hb_004108_070--Hb_000815_320 Hb_012286_030 Hb_012286_030 Hb_004108_070--Hb_012286_030 Hb_002375_070 Hb_002375_070 Hb_004108_070--Hb_002375_070 Hb_000390_300 Hb_000390_300 Hb_006693_020--Hb_000390_300 Hb_000431_170 Hb_000431_170 Hb_006693_020--Hb_000431_170 Hb_000465_390 Hb_000465_390 Hb_006693_020--Hb_000465_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.5572 6.61917 19.7293 27.6719 17.5905 17.5657
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.2532 36.6177 25.0221 13.9978 13.5169

CAGE analysis