Hb_000317_420

Information

Type -
Description -
Location Contig317: 278076-280012
Sequence    

Annotation

kegg
ID rcu:RCOM_1176870
description 4,5-DOPA dioxygenase extradiol, putative
nr
ID XP_012088393.1
description PREDICTED: extradiol ring-cleavage dioxygenase [Jatropha curcas]
swissprot
ID Q70FG7
description 4,5-DOPA dioxygenase extradiol OS=Beta vulgaris GN=DODA PE=1 SV=1
trembl
ID A0A067JXI6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25881 PE=4 SV=1
Gene Ontology
ID GO:0008198
description extradiol ring-cleavage dioxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33412: 278088-280012
cDNA
(Sanger)
(ID:Location)		 039_B05.ab1: 278440-280009

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_420 0.0 - - PREDICTED: extradiol ring-cleavage dioxygenase [Jatropha curcas]
2 Hb_006836_030 0.1097887847 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
3 Hb_007441_240 0.12087068 - - ethphon-induced protein [Hevea brasiliensis]
4 Hb_004007_110 0.1281601883 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
5 Hb_000723_170 0.1313679004 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
6 Hb_001975_040 0.1369431177 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
7 Hb_158104_020 0.1484418496 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
8 Hb_001510_020 0.1494575185 - - Diaminopimelate epimerase, putative [Ricinus communis]
9 Hb_000012_110 0.1507312672 - - hypothetical protein CICLE_v10008613mg [Citrus clementina]
10 Hb_007590_090 0.1516884661 - - PREDICTED: O-glucosyltransferase rumi [Jatropha curcas]
11 Hb_000210_060 0.1569780896 transcription factor TF Family: E2F-DP hypothetical protein JCGZ_08780 [Jatropha curcas]
12 Hb_003305_020 0.1575015938 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
13 Hb_002835_340 0.1597588341 - - PREDICTED: peroxisomal primary amine oxidase [Jatropha curcas]
14 Hb_000684_520 0.1607135721 - - glutathione S-transferase L3-like [Jatropha curcas]
15 Hb_012807_130 0.1613032293 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
16 Hb_000771_060 0.1641620606 - - PREDICTED: spermine synthase [Jatropha curcas]
17 Hb_028049_010 0.1647624656 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
18 Hb_015057_020 0.1703506666 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
19 Hb_002768_090 0.1707335959 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
20 Hb_000110_120 0.174998351 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_000317_420 Hb_000317_420 Hb_006836_030 Hb_006836_030 Hb_000317_420--Hb_006836_030 Hb_007441_240 Hb_007441_240 Hb_000317_420--Hb_007441_240 Hb_004007_110 Hb_004007_110 Hb_000317_420--Hb_004007_110 Hb_000723_170 Hb_000723_170 Hb_000317_420--Hb_000723_170 Hb_001975_040 Hb_001975_040 Hb_000317_420--Hb_001975_040 Hb_158104_020 Hb_158104_020 Hb_000317_420--Hb_158104_020 Hb_027298_030 Hb_027298_030 Hb_006836_030--Hb_027298_030 Hb_000012_110 Hb_000012_110 Hb_006836_030--Hb_000012_110 Hb_006836_030--Hb_001975_040 Hb_001975_030 Hb_001975_030 Hb_006836_030--Hb_001975_030 Hb_006836_030--Hb_004007_110 Hb_000110_120 Hb_000110_120 Hb_007441_240--Hb_000110_120 Hb_000077_180 Hb_000077_180 Hb_007441_240--Hb_000077_180 Hb_000739_140 Hb_000739_140 Hb_007441_240--Hb_000739_140 Hb_028049_010 Hb_028049_010 Hb_007441_240--Hb_028049_010 Hb_000771_060 Hb_000771_060 Hb_007441_240--Hb_000771_060 Hb_004007_110--Hb_000012_110 Hb_007590_090 Hb_007590_090 Hb_004007_110--Hb_007590_090 Hb_002110_100 Hb_002110_100 Hb_004007_110--Hb_002110_100 Hb_004158_020 Hb_004158_020 Hb_004007_110--Hb_004158_020 Hb_004007_110--Hb_028049_010 Hb_012305_130 Hb_012305_130 Hb_004007_110--Hb_012305_130 Hb_001510_020 Hb_001510_020 Hb_000723_170--Hb_001510_020 Hb_003376_180 Hb_003376_180 Hb_000723_170--Hb_003376_180 Hb_000251_030 Hb_000251_030 Hb_000723_170--Hb_000251_030 Hb_003305_020 Hb_003305_020 Hb_000723_170--Hb_003305_020 Hb_000210_060 Hb_000210_060 Hb_000723_170--Hb_000210_060 Hb_001975_040--Hb_001975_030 Hb_002835_340 Hb_002835_340 Hb_001975_040--Hb_002835_340 Hb_001975_040--Hb_000012_110 Hb_002660_120 Hb_002660_120 Hb_001975_040--Hb_002660_120 Hb_158104_020--Hb_007441_240 Hb_000270_740 Hb_000270_740 Hb_158104_020--Hb_000270_740 Hb_000407_070 Hb_000407_070 Hb_158104_020--Hb_000407_070 Hb_158104_020--Hb_028049_010 Hb_158104_020--Hb_000723_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.92454 18.0079 33.0024 105.622 3.7969 4.04532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.7337 90.1592 29.0509 71.8055 49.4388

CAGE analysis