Hb_000317_450

Information

Type -
Description -
Location Contig317: 313712-316596
Sequence    

Annotation

kegg
ID cit:102614193
description putative nuclease HARBI1-like
nr
ID XP_012088400.1
description PREDICTED: uncharacterized protein LOC105647032 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JK46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25884 PE=4 SV=1
Gene Ontology
ID GO:0016301
description cai-1 autoinducer sensor kinase phosphatase cqss isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33417: 313627-315110 , PASA_asmbl_33418: 315112-315784 , PASA_asmbl_33419: 316255-316536
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_450 0.0 - - PREDICTED: uncharacterized protein LOC105647032 isoform X1 [Jatropha curcas]
2 Hb_005063_080 0.1448775265 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
3 Hb_003647_020 0.1751044811 - - hypothetical protein JCGZ_25095 [Jatropha curcas]
4 Hb_001623_080 0.1783486872 - - calcineurin-like phosphoesterase [Manihot esculenta]
5 Hb_000116_400 0.1853740829 - - protein with unknown function [Ricinus communis]
6 Hb_003777_250 0.1956719533 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
7 Hb_006198_130 0.1965660552 - - PREDICTED: uncharacterized protein LOC105644406 [Jatropha curcas]
8 Hb_004907_090 0.1996605399 - - ATP binding protein, putative [Ricinus communis]
9 Hb_009079_050 0.2024069635 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
10 Hb_001907_070 0.2029830529 - - 50S ribosomal protein L1p, putative [Ricinus communis]
11 Hb_001793_050 0.2042252905 - - PREDICTED: uncharacterized protein LOC105632663 [Jatropha curcas]
12 Hb_001675_190 0.2062453752 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
13 Hb_004052_180 0.2077590225 - - PREDICTED: protein COBRA-like [Jatropha curcas]
14 Hb_163950_070 0.2082114051 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
15 Hb_001049_150 0.2092703565 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
16 Hb_000645_070 0.2096723537 - - aldehyde dehydrogenase, putative [Ricinus communis]
17 Hb_001369_100 0.2096739624 - - hypothetical protein JCGZ_26280 [Jatropha curcas]
18 Hb_007304_030 0.2101630174 - - PREDICTED: uncharacterized protein LOC105635926 isoform X2 [Jatropha curcas]
19 Hb_006911_070 0.211058096 - - 50S ribosomal protein L1p, putative [Ricinus communis]
20 Hb_000029_110 0.2115186219 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000317_450 Hb_000317_450 Hb_005063_080 Hb_005063_080 Hb_000317_450--Hb_005063_080 Hb_003647_020 Hb_003647_020 Hb_000317_450--Hb_003647_020 Hb_001623_080 Hb_001623_080 Hb_000317_450--Hb_001623_080 Hb_000116_400 Hb_000116_400 Hb_000317_450--Hb_000116_400 Hb_003777_250 Hb_003777_250 Hb_000317_450--Hb_003777_250 Hb_006198_130 Hb_006198_130 Hb_000317_450--Hb_006198_130 Hb_005618_150 Hb_005618_150 Hb_005063_080--Hb_005618_150 Hb_000665_270 Hb_000665_270 Hb_005063_080--Hb_000665_270 Hb_001907_070 Hb_001907_070 Hb_005063_080--Hb_001907_070 Hb_006911_070 Hb_006911_070 Hb_005063_080--Hb_006911_070 Hb_005063_080--Hb_006198_130 Hb_000336_200 Hb_000336_200 Hb_005063_080--Hb_000336_200 Hb_001976_060 Hb_001976_060 Hb_003647_020--Hb_001976_060 Hb_001004_080 Hb_001004_080 Hb_003647_020--Hb_001004_080 Hb_001584_130 Hb_001584_130 Hb_003647_020--Hb_001584_130 Hb_001049_150 Hb_001049_150 Hb_003647_020--Hb_001049_150 Hb_003647_020--Hb_001623_080 Hb_001623_080--Hb_001049_150 Hb_001623_080--Hb_001976_060 Hb_004899_340 Hb_004899_340 Hb_001623_080--Hb_004899_340 Hb_000959_300 Hb_000959_300 Hb_001623_080--Hb_000959_300 Hb_000665_190 Hb_000665_190 Hb_001623_080--Hb_000665_190 Hb_011021_010 Hb_011021_010 Hb_001623_080--Hb_011021_010 Hb_000934_110 Hb_000934_110 Hb_000116_400--Hb_000934_110 Hb_000116_400--Hb_005063_080 Hb_000116_400--Hb_001623_080 Hb_002320_090 Hb_002320_090 Hb_000116_400--Hb_002320_090 Hb_000200_350 Hb_000200_350 Hb_000116_400--Hb_000200_350 Hb_000964_170 Hb_000964_170 Hb_000116_400--Hb_000964_170 Hb_005288_110 Hb_005288_110 Hb_003777_250--Hb_005288_110 Hb_006006_060 Hb_006006_060 Hb_003777_250--Hb_006006_060 Hb_001675_050 Hb_001675_050 Hb_003777_250--Hb_001675_050 Hb_003777_250--Hb_005063_080 Hb_004710_020 Hb_004710_020 Hb_003777_250--Hb_004710_020 Hb_000328_050 Hb_000328_050 Hb_003777_250--Hb_000328_050 Hb_003171_030 Hb_003171_030 Hb_006198_130--Hb_003171_030 Hb_009687_020 Hb_009687_020 Hb_006198_130--Hb_009687_020 Hb_000059_270 Hb_000059_270 Hb_006198_130--Hb_000059_270 Hb_001269_500 Hb_001269_500 Hb_006198_130--Hb_001269_500 Hb_163950_070 Hb_163950_070 Hb_006198_130--Hb_163950_070 Hb_001220_050 Hb_001220_050 Hb_006198_130--Hb_001220_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.257616 0.0839441 1.25176 1.35575 1.13059 0.300788
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.285909 0.149812 0.131745 0.122599 1.89599

CAGE analysis