Hb_000317_470

Information

Type -
Description -
Location Contig317: 330967-342398
Sequence    

Annotation

kegg
ID pop:POPTR_0005s14820g
description hypothetical protein
nr
ID XP_012088405.1
description PREDICTED: CCR4-NOT transcription complex subunit 11 [Jatropha curcas]
swissprot
ID A4QP78
description CCR4-NOT transcription complex subunit 11 OS=Danio rerio GN=cnot11 PE=2 SV=1
trembl
ID A0A067JW79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25887 PE=4 SV=1
Gene Ontology
ID GO:0009630
description ccr4-not transcription complex subunit 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33422: 330989-342474
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_470 0.0 - - PREDICTED: CCR4-NOT transcription complex subunit 11 [Jatropha curcas]
2 Hb_123915_040 0.0576797201 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
3 Hb_032986_010 0.060430128 - - Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis]
4 Hb_000522_170 0.0634872769 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
5 Hb_003163_020 0.0664804825 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
6 Hb_007416_300 0.0716095059 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
7 Hb_002272_130 0.0733785935 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
8 Hb_002276_170 0.0737521625 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
9 Hb_004414_060 0.0768235404 - - hypothetical protein JCGZ_17225 [Jatropha curcas]
10 Hb_000417_130 0.0775891161 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
11 Hb_003185_010 0.0780295988 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
12 Hb_005144_090 0.0785391284 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
13 Hb_021419_030 0.0786690269 - - hypothetical protein glysoja_023295 [Glycine soja]
14 Hb_003861_050 0.079539246 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
15 Hb_010381_090 0.079591537 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
16 Hb_011930_160 0.0797296469 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]
17 Hb_000617_180 0.0819299302 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
18 Hb_001357_350 0.0820996118 - - conserved hypothetical protein [Ricinus communis]
19 Hb_013399_020 0.0821570183 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
20 Hb_002375_010 0.0824114421 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000317_470 Hb_000317_470 Hb_123915_040 Hb_123915_040 Hb_000317_470--Hb_123915_040 Hb_032986_010 Hb_032986_010 Hb_000317_470--Hb_032986_010 Hb_000522_170 Hb_000522_170 Hb_000317_470--Hb_000522_170 Hb_003163_020 Hb_003163_020 Hb_000317_470--Hb_003163_020 Hb_007416_300 Hb_007416_300 Hb_000317_470--Hb_007416_300 Hb_002272_130 Hb_002272_130 Hb_000317_470--Hb_002272_130 Hb_000417_130 Hb_000417_130 Hb_123915_040--Hb_000417_130 Hb_004254_090 Hb_004254_090 Hb_123915_040--Hb_004254_090 Hb_001357_250 Hb_001357_250 Hb_123915_040--Hb_001357_250 Hb_000905_110 Hb_000905_110 Hb_123915_040--Hb_000905_110 Hb_001021_150 Hb_001021_150 Hb_123915_040--Hb_001021_150 Hb_002997_080 Hb_002997_080 Hb_032986_010--Hb_002997_080 Hb_000883_020 Hb_000883_020 Hb_032986_010--Hb_000883_020 Hb_009545_080 Hb_009545_080 Hb_032986_010--Hb_009545_080 Hb_032986_010--Hb_002272_130 Hb_023344_120 Hb_023344_120 Hb_032986_010--Hb_023344_120 Hb_001009_320 Hb_001009_320 Hb_000522_170--Hb_001009_320 Hb_000006_010 Hb_000006_010 Hb_000522_170--Hb_000006_010 Hb_001221_080 Hb_001221_080 Hb_000522_170--Hb_001221_080 Hb_021419_030 Hb_021419_030 Hb_000522_170--Hb_021419_030 Hb_000139_260 Hb_000139_260 Hb_000522_170--Hb_000139_260 Hb_011930_160 Hb_011930_160 Hb_003163_020--Hb_011930_160 Hb_004619_030 Hb_004619_030 Hb_003163_020--Hb_004619_030 Hb_000347_070 Hb_000347_070 Hb_003163_020--Hb_000347_070 Hb_000617_180 Hb_000617_180 Hb_003163_020--Hb_000617_180 Hb_000011_200 Hb_000011_200 Hb_003163_020--Hb_000011_200 Hb_010381_090 Hb_010381_090 Hb_007416_300--Hb_010381_090 Hb_001051_080 Hb_001051_080 Hb_007416_300--Hb_001051_080 Hb_002872_030 Hb_002872_030 Hb_007416_300--Hb_002872_030 Hb_003549_150 Hb_003549_150 Hb_007416_300--Hb_003549_150 Hb_033642_030 Hb_033642_030 Hb_007416_300--Hb_033642_030 Hb_008453_140 Hb_008453_140 Hb_007416_300--Hb_008453_140 Hb_000462_060 Hb_000462_060 Hb_002272_130--Hb_000462_060 Hb_002272_130--Hb_033642_030 Hb_000035_110 Hb_000035_110 Hb_002272_130--Hb_000035_110 Hb_000200_380 Hb_000200_380 Hb_002272_130--Hb_000200_380 Hb_002398_030 Hb_002398_030 Hb_002272_130--Hb_002398_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7046 10.6211 20.4336 16.1832 24.0344 17.2716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.0064 13.9942 15.9162 16.7255 12.0456

CAGE analysis