Hb_000317_490

Information

Type -
Description -
Location Contig317: 376695-377777
Sequence    

Annotation

kegg
ID rcu:RCOM_1176930
description Gibberellin receptor GID1, putative
nr
ID XP_002518025.1
description Gibberellin receptor GID1, putative [Ricinus communis]
swissprot
ID Q9LT10
description Probable carboxylesterase 18 OS=Arabidopsis thaliana GN=CXE18 PE=1 SV=1
trembl
ID B9RWA6
description Gibberellin receptor GID1, putative OS=Ricinus communis GN=RCOM_1176930 PE=4 SV=1
Gene Ontology
ID GO:0016787
description probable carboxylesterase 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33424: 376589-377974
cDNA
(Sanger)
(ID:Location)		 014_B12.ab1: 376627-377302 , 025_P09.ab1: 376637-377385 , 045_M10.ab1: 376644-377329 , 045_O15.ab1: 376589-377346 , 047_B08.ab1: 376644-377404

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_490 0.0 - - Gibberellin receptor GID1, putative [Ricinus communis]
2 Hb_000032_440 0.0991352839 - - protein with unknown function [Ricinus communis]
3 Hb_002016_170 0.1197207591 - - DNA binding protein, putative [Ricinus communis]
4 Hb_002183_070 0.1198698569 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
5 Hb_011316_100 0.1315411291 - - PREDICTED: glycosyltransferase family 64 protein C4-like [Jatropha curcas]
6 Hb_000072_070 0.1335775104 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl diphosphate synthase [Hevea brasiliensis]
7 Hb_000575_030 0.1383330078 - - unnamed protein product [Vitis vinifera]
8 Hb_002234_060 0.13841619 - - F-box protein, atfbl3, putative [Ricinus communis]
9 Hb_171376_010 0.1393280502 - - PREDICTED: uncharacterized protein LOC105630877 isoform X1 [Jatropha curcas]
10 Hb_002374_570 0.1403208946 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
11 Hb_003016_020 0.1443099781 - - PREDICTED: 4-coumarate--CoA ligase-like 6 isoform X1 [Jatropha curcas]
12 Hb_035273_030 0.1460809376 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
13 Hb_002284_310 0.1471760016 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
14 Hb_003994_290 0.1478961746 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Jatropha curcas]
15 Hb_000421_180 0.151515509 - - ATP binding protein, putative [Ricinus communis]
16 Hb_007479_050 0.1518724887 - - PREDICTED: uncharacterized protein LOC105649412 [Jatropha curcas]
17 Hb_000307_140 0.1543633842 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
18 Hb_001983_020 0.1561774759 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
19 Hb_008062_040 0.1582224007 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
20 Hb_000808_050 0.1585487138 - - exonuclease, putative [Ricinus communis]

Gene co-expression network

sample Hb_000317_490 Hb_000317_490 Hb_000032_440 Hb_000032_440 Hb_000317_490--Hb_000032_440 Hb_002016_170 Hb_002016_170 Hb_000317_490--Hb_002016_170 Hb_002183_070 Hb_002183_070 Hb_000317_490--Hb_002183_070 Hb_011316_100 Hb_011316_100 Hb_000317_490--Hb_011316_100 Hb_000072_070 Hb_000072_070 Hb_000317_490--Hb_000072_070 Hb_000575_030 Hb_000575_030 Hb_000317_490--Hb_000575_030 Hb_000708_040 Hb_000708_040 Hb_000032_440--Hb_000708_040 Hb_002284_310 Hb_002284_310 Hb_000032_440--Hb_002284_310 Hb_000243_080 Hb_000243_080 Hb_000032_440--Hb_000243_080 Hb_000032_440--Hb_002183_070 Hb_003016_020 Hb_003016_020 Hb_000032_440--Hb_003016_020 Hb_002374_570 Hb_002374_570 Hb_002016_170--Hb_002374_570 Hb_003994_290 Hb_003994_290 Hb_002016_170--Hb_003994_290 Hb_000212_330 Hb_000212_330 Hb_002016_170--Hb_000212_330 Hb_001983_020 Hb_001983_020 Hb_002016_170--Hb_001983_020 Hb_000094_300 Hb_000094_300 Hb_002016_170--Hb_000094_300 Hb_181729_010 Hb_181729_010 Hb_002016_170--Hb_181729_010 Hb_000046_100 Hb_000046_100 Hb_002183_070--Hb_000046_100 Hb_002183_070--Hb_002374_570 Hb_002183_070--Hb_003994_290 Hb_002183_070--Hb_002016_170 Hb_021596_090 Hb_021596_090 Hb_002183_070--Hb_021596_090 Hb_011316_100--Hb_000072_070 Hb_035273_030 Hb_035273_030 Hb_011316_100--Hb_035273_030 Hb_007479_050 Hb_007479_050 Hb_011316_100--Hb_007479_050 Hb_011316_100--Hb_002183_070 Hb_001053_180 Hb_001053_180 Hb_011316_100--Hb_001053_180 Hb_001328_040 Hb_001328_040 Hb_011316_100--Hb_001328_040 Hb_000189_310 Hb_000189_310 Hb_000072_070--Hb_000189_310 Hb_004007_160 Hb_004007_160 Hb_000072_070--Hb_004007_160 Hb_008062_040 Hb_008062_040 Hb_000072_070--Hb_008062_040 Hb_001085_050 Hb_001085_050 Hb_000072_070--Hb_001085_050 Hb_000072_070--Hb_000575_030 Hb_000575_030--Hb_008062_040 Hb_003607_050 Hb_003607_050 Hb_000575_030--Hb_003607_050 Hb_004195_270 Hb_004195_270 Hb_000575_030--Hb_004195_270 Hb_000575_030--Hb_011316_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
181.17 36.5684 141.912 110.831 41.8335 90.5642
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
230.285 72.756 154.431 37.2823 73.7844

CAGE analysis