Hb_000318_120

Information

Type transcription factor
Description TF Family: SWI/SNF-BAF60b
Location Contig318: 111161-117530
Sequence    

Annotation

kegg
ID tcc:TCM_006997
description SWIB complex BAF60b domain-containing protein, putative
nr
ID XP_012072454.1
description PREDICTED: DNA ligase 1 isoform X2 [Jatropha curcas]
swissprot
ID O74503
description Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1
trembl
ID A0A061E1L0
description SWIB complex BAF60b domain-containing protein, putative OS=Theobroma cacao GN=TCM_006997 PE=4 SV=1
Gene Ontology
ID GO:0009506
description swib complex baf60b domain-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33495: 111079-113261 , PASA_asmbl_33496: 113262-113506 , PASA_asmbl_33497: 113272-114684 , PASA_asmbl_33498: 114901-116477
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_120 0.0 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: DNA ligase 1 isoform X2 [Jatropha curcas]
2 Hb_055235_020 0.0499239908 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
3 Hb_000134_270 0.0602776925 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
4 Hb_003943_020 0.062920331 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
5 Hb_000523_080 0.0683358434 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
6 Hb_007044_110 0.0690612357 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_000563_420 0.0728356378 - - PREDICTED: acyl-CoA dehydrogenase family member 10 [Jatropha curcas]
8 Hb_013358_070 0.0738424376 - - protein with unknown function [Ricinus communis]
9 Hb_000398_020 0.0772649026 - - PREDICTED: superkiller viralicidic activity 2-like 2 isoform X1 [Jatropha curcas]
10 Hb_160459_040 0.0786428612 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
11 Hb_005289_040 0.0792855913 - - poly(A) polymerase, putative [Ricinus communis]
12 Hb_000398_080 0.0793841907 - - tip120, putative [Ricinus communis]
13 Hb_128548_010 0.079497332 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000527_010 0.0798715376 - - katanin P80 subunit, putative [Ricinus communis]
15 Hb_023344_010 0.0800776164 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
16 Hb_004976_010 0.080884322 - - hypothetical protein RCOM_1429110 [Ricinus communis]
17 Hb_001636_050 0.0809052009 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
18 Hb_007305_020 0.0810214911 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
19 Hb_000917_160 0.0813718593 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
20 Hb_008568_020 0.082165717 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]

Gene co-expression network

sample Hb_000318_120 Hb_000318_120 Hb_055235_020 Hb_055235_020 Hb_000318_120--Hb_055235_020 Hb_000134_270 Hb_000134_270 Hb_000318_120--Hb_000134_270 Hb_003943_020 Hb_003943_020 Hb_000318_120--Hb_003943_020 Hb_000523_080 Hb_000523_080 Hb_000318_120--Hb_000523_080 Hb_007044_110 Hb_007044_110 Hb_000318_120--Hb_007044_110 Hb_000563_420 Hb_000563_420 Hb_000318_120--Hb_000563_420 Hb_011972_020 Hb_011972_020 Hb_055235_020--Hb_011972_020 Hb_055235_020--Hb_007044_110 Hb_004976_010 Hb_004976_010 Hb_055235_020--Hb_004976_010 Hb_001636_050 Hb_001636_050 Hb_055235_020--Hb_001636_050 Hb_000457_230 Hb_000457_230 Hb_055235_020--Hb_000457_230 Hb_000044_040 Hb_000044_040 Hb_000134_270--Hb_000044_040 Hb_005289_040 Hb_005289_040 Hb_000134_270--Hb_005289_040 Hb_002889_010 Hb_002889_010 Hb_000134_270--Hb_002889_010 Hb_000665_120 Hb_000665_120 Hb_000134_270--Hb_000665_120 Hb_004020_040 Hb_004020_040 Hb_000134_270--Hb_004020_040 Hb_003943_020--Hb_000523_080 Hb_128548_010 Hb_128548_010 Hb_003943_020--Hb_128548_010 Hb_005333_160 Hb_005333_160 Hb_003943_020--Hb_005333_160 Hb_013358_070 Hb_013358_070 Hb_003943_020--Hb_013358_070 Hb_001723_140 Hb_001723_140 Hb_003943_020--Hb_001723_140 Hb_000523_080--Hb_128548_010 Hb_007929_080 Hb_007929_080 Hb_000523_080--Hb_007929_080 Hb_009771_110 Hb_009771_110 Hb_000523_080--Hb_009771_110 Hb_000523_080--Hb_001723_140 Hb_000523_080--Hb_013358_070 Hb_000205_260 Hb_000205_260 Hb_007044_110--Hb_000205_260 Hb_007044_110--Hb_000457_230 Hb_005523_020 Hb_005523_020 Hb_007044_110--Hb_005523_020 Hb_007044_110--Hb_001636_050 Hb_007044_110--Hb_004976_010 Hb_000864_030 Hb_000864_030 Hb_000563_420--Hb_000864_030 Hb_004800_180 Hb_004800_180 Hb_000563_420--Hb_004800_180 Hb_000563_420--Hb_055235_020 Hb_000115_280 Hb_000115_280 Hb_000563_420--Hb_000115_280 Hb_000563_420--Hb_007044_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.5785 22.8075 22.4502 14.8525 23.8108 19.4805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8379 9.96391 6.15873 18.2215 20.0329

CAGE analysis