Hb_000318_140

Information

Type -
Description -
Location Contig318: 137693-143504
Sequence    

Annotation

kegg
ID tcc:TCM_006995
description Kinase superfamily protein isoform 1
nr
ID XP_007042345.1
description Kinase superfamily protein isoform 2 [Theobroma cacao]
swissprot
ID Q940H6
description Serine/threonine-protein kinase SRK2E OS=Arabidopsis thaliana GN=SRK2E PE=1 SV=1
trembl
ID A0A061E7H5
description Kinase superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_006995 PE=4 SV=1
Gene Ontology
ID GO:0005634
description serine threonine-protein kinase srk2e

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33501: 137803-143361 , PASA_asmbl_33502: 141323-141664
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_140 0.0 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
2 Hb_025557_020 0.0553590288 - - PREDICTED: activating signal cointegrator 1 [Jatropha curcas]
3 Hb_002820_040 0.0633746054 - - conserved hypothetical protein [Ricinus communis]
4 Hb_018663_020 0.0637448073 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
5 Hb_000631_150 0.0662451743 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
6 Hb_000035_400 0.0714588817 - - PREDICTED: lariat debranching enzyme-like [Citrus sinensis]
7 Hb_009615_110 0.0731581723 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
8 Hb_009913_050 0.0744009757 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
9 Hb_000317_440 0.0752273868 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
10 Hb_164010_020 0.0756208036 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
11 Hb_153547_010 0.0758426947 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
12 Hb_000134_360 0.0792196263 - - PREDICTED: protein gar2 [Jatropha curcas]
13 Hb_000230_370 0.0793386298 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
14 Hb_073171_080 0.0794456674 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
15 Hb_002725_070 0.0811989715 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
16 Hb_001009_050 0.0818743181 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
17 Hb_000372_040 0.0829360227 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_002883_010 0.0834639892 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
19 Hb_000849_100 0.0834851043 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
20 Hb_000212_280 0.0840373532 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]

Gene co-expression network

sample Hb_000318_140 Hb_000318_140 Hb_025557_020 Hb_025557_020 Hb_000318_140--Hb_025557_020 Hb_002820_040 Hb_002820_040 Hb_000318_140--Hb_002820_040 Hb_018663_020 Hb_018663_020 Hb_000318_140--Hb_018663_020 Hb_000631_150 Hb_000631_150 Hb_000318_140--Hb_000631_150 Hb_000035_400 Hb_000035_400 Hb_000318_140--Hb_000035_400 Hb_009615_110 Hb_009615_110 Hb_000318_140--Hb_009615_110 Hb_164010_020 Hb_164010_020 Hb_025557_020--Hb_164010_020 Hb_025557_020--Hb_000631_150 Hb_025557_020--Hb_018663_020 Hb_000116_170 Hb_000116_170 Hb_025557_020--Hb_000116_170 Hb_001226_180 Hb_001226_180 Hb_025557_020--Hb_001226_180 Hb_002725_070 Hb_002725_070 Hb_002820_040--Hb_002725_070 Hb_006913_040 Hb_006913_040 Hb_002820_040--Hb_006913_040 Hb_000078_100 Hb_000078_100 Hb_002820_040--Hb_000078_100 Hb_007416_310 Hb_007416_310 Hb_002820_040--Hb_007416_310 Hb_000645_150 Hb_000645_150 Hb_002820_040--Hb_000645_150 Hb_005914_230 Hb_005914_230 Hb_018663_020--Hb_005914_230 Hb_003384_030 Hb_003384_030 Hb_018663_020--Hb_003384_030 Hb_018663_020--Hb_001226_180 Hb_001969_040 Hb_001969_040 Hb_018663_020--Hb_001969_040 Hb_001009_050 Hb_001009_050 Hb_018663_020--Hb_001009_050 Hb_000317_440 Hb_000317_440 Hb_000631_150--Hb_000317_440 Hb_000134_360 Hb_000134_360 Hb_000631_150--Hb_000134_360 Hb_000849_100 Hb_000849_100 Hb_000631_150--Hb_000849_100 Hb_004608_020 Hb_004608_020 Hb_000631_150--Hb_004608_020 Hb_031754_010 Hb_031754_010 Hb_000631_150--Hb_031754_010 Hb_007534_040 Hb_007534_040 Hb_000035_400--Hb_007534_040 Hb_073171_080 Hb_073171_080 Hb_000035_400--Hb_073171_080 Hb_005129_050 Hb_005129_050 Hb_000035_400--Hb_005129_050 Hb_000291_120 Hb_000291_120 Hb_000035_400--Hb_000291_120 Hb_000230_370 Hb_000230_370 Hb_000035_400--Hb_000230_370 Hb_000320_440 Hb_000320_440 Hb_009615_110--Hb_000320_440 Hb_002955_010 Hb_002955_010 Hb_009615_110--Hb_002955_010 Hb_009615_110--Hb_001009_050 Hb_000270_450 Hb_000270_450 Hb_009615_110--Hb_000270_450 Hb_006173_020 Hb_006173_020 Hb_009615_110--Hb_006173_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
202.327 71.4889 37.3382 24.5084 216.132 244.176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
121.062 54.2583 49.3535 59.1767 31.0652

CAGE analysis