Hb_000318_150

Information

Type -
Description -
Location Contig318: 144506-149291
Sequence    

Annotation

kegg
ID rcu:RCOM_0774000
description RNA-binding protein Nova-1, putative (EC:3.1.2.15)
nr
ID XP_002521836.1
description RNA-binding protein Nova-1, putative [Ricinus communis]
swissprot
ID Q91WJ8
description Far upstream element-binding protein 1 OS=Mus musculus GN=Fubp1 PE=1 SV=1
trembl
ID B9S767
description RNA-binding protein Nova-1, putative OS=Ricinus communis GN=RCOM_0774000 PE=4 SV=1
Gene Ontology
ID GO:0003676
description far upstream element-binding protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33504: 147147-147619 , PASA_asmbl_33505: 144912-149272 , PASA_asmbl_33506: 145989-146879
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_150 0.0 - - RNA-binding protein Nova-1, putative [Ricinus communis]
2 Hb_000960_080 0.0470032813 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
3 Hb_002357_070 0.0569405759 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
4 Hb_000787_200 0.0626576494 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_000059_240 0.0630233239 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
6 Hb_000270_170 0.0650770043 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
7 Hb_000173_190 0.0651882793 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003680_020 0.0676818094 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_033312_130 0.0678674756 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
10 Hb_160608_010 0.0682808663 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
11 Hb_001507_050 0.0689160854 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_011674_040 0.0700080558 - - PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
13 Hb_003636_080 0.0700747377 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
14 Hb_000373_170 0.0705452446 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
15 Hb_006478_030 0.0706285676 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
16 Hb_007245_020 0.0733103043 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
17 Hb_000976_110 0.0746444672 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
18 Hb_005074_020 0.0748733671 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
19 Hb_000009_030 0.0753343371 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
20 Hb_000035_100 0.0759609801 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000318_150 Hb_000318_150 Hb_000960_080 Hb_000960_080 Hb_000318_150--Hb_000960_080 Hb_002357_070 Hb_002357_070 Hb_000318_150--Hb_002357_070 Hb_000787_200 Hb_000787_200 Hb_000318_150--Hb_000787_200 Hb_000059_240 Hb_000059_240 Hb_000318_150--Hb_000059_240 Hb_000270_170 Hb_000270_170 Hb_000318_150--Hb_000270_170 Hb_000173_190 Hb_000173_190 Hb_000318_150--Hb_000173_190 Hb_001507_050 Hb_001507_050 Hb_000960_080--Hb_001507_050 Hb_003680_020 Hb_003680_020 Hb_000960_080--Hb_003680_020 Hb_000960_080--Hb_000270_170 Hb_000960_080--Hb_000059_240 Hb_033312_130 Hb_033312_130 Hb_000960_080--Hb_033312_130 Hb_007245_020 Hb_007245_020 Hb_002357_070--Hb_007245_020 Hb_001221_180 Hb_001221_180 Hb_002357_070--Hb_001221_180 Hb_123531_010 Hb_123531_010 Hb_002357_070--Hb_123531_010 Hb_000934_210 Hb_000934_210 Hb_002357_070--Hb_000934_210 Hb_012055_110 Hb_012055_110 Hb_002357_070--Hb_012055_110 Hb_011674_040 Hb_011674_040 Hb_000787_200--Hb_011674_040 Hb_000834_230 Hb_000834_230 Hb_000787_200--Hb_000834_230 Hb_080147_050 Hb_080147_050 Hb_000787_200--Hb_080147_050 Hb_000342_050 Hb_000342_050 Hb_000787_200--Hb_000342_050 Hb_000787_200--Hb_000270_170 Hb_000059_240--Hb_003680_020 Hb_006210_010 Hb_006210_010 Hb_000059_240--Hb_006210_010 Hb_000059_240--Hb_033312_130 Hb_007904_300 Hb_007904_300 Hb_000059_240--Hb_007904_300 Hb_000270_170--Hb_001507_050 Hb_000270_170--Hb_011674_040 Hb_006100_020 Hb_006100_020 Hb_000270_170--Hb_006100_020 Hb_001488_020 Hb_001488_020 Hb_000270_170--Hb_001488_020 Hb_001635_110 Hb_001635_110 Hb_000173_190--Hb_001635_110 Hb_000173_190--Hb_006100_020 Hb_001300_280 Hb_001300_280 Hb_000173_190--Hb_001300_280 Hb_000035_100 Hb_000035_100 Hb_000173_190--Hb_000035_100 Hb_000173_190--Hb_000960_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.47682 11.5559 10.3079 8.96378 4.21793 5.01128
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.4825 3.80095 3.932 11.8622 10.6481

CAGE analysis