Hb_000318_160

Information

Type -
Description -
Location Contig318: 150992-154752
Sequence    

Annotation

kegg
ID tcc:TCM_006993
description Embryo defective 1273, putative isoform 1
nr
ID XP_012072461.1
description PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L2F1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04887 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33507: 151258-154652 , PASA_asmbl_33508: 151285-154577
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_160 0.0 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
2 Hb_003349_080 0.052559186 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
3 Hb_003050_280 0.0599569344 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
4 Hb_000224_140 0.0643364634 - - ribonuclease z, chloroplast, putative [Ricinus communis]
5 Hb_068056_030 0.078594423 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
6 Hb_000928_130 0.0821287866 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
7 Hb_000445_490 0.0851320367 - - -
8 Hb_000096_150 0.0887336159 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
9 Hb_000125_210 0.0892635122 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
10 Hb_002918_290 0.0942667932 - - PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]
11 Hb_001076_020 0.0958668805 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
12 Hb_019113_020 0.0985456721 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
13 Hb_161175_010 0.0986346439 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
14 Hb_003880_030 0.1008921648 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
15 Hb_004459_040 0.1015678527 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
16 Hb_001512_080 0.1058708194 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
17 Hb_033153_060 0.1078817444 - - Transcription elongation factor, putative [Ricinus communis]
18 Hb_004125_040 0.1081558873 - - -
19 Hb_001218_040 0.1088106651 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
20 Hb_003849_150 0.1089006278 - - PREDICTED: uncharacterized protein LOC105644698 [Jatropha curcas]

Gene co-expression network

sample Hb_000318_160 Hb_000318_160 Hb_003349_080 Hb_003349_080 Hb_000318_160--Hb_003349_080 Hb_003050_280 Hb_003050_280 Hb_000318_160--Hb_003050_280 Hb_000224_140 Hb_000224_140 Hb_000318_160--Hb_000224_140 Hb_068056_030 Hb_068056_030 Hb_000318_160--Hb_068056_030 Hb_000928_130 Hb_000928_130 Hb_000318_160--Hb_000928_130 Hb_000445_490 Hb_000445_490 Hb_000318_160--Hb_000445_490 Hb_003349_080--Hb_000224_140 Hb_003349_080--Hb_003050_280 Hb_003349_080--Hb_068056_030 Hb_000680_140 Hb_000680_140 Hb_003349_080--Hb_000680_140 Hb_002918_290 Hb_002918_290 Hb_003349_080--Hb_002918_290 Hb_004125_040 Hb_004125_040 Hb_003050_280--Hb_004125_040 Hb_003050_280--Hb_000224_140 Hb_002872_050 Hb_002872_050 Hb_003050_280--Hb_002872_050 Hb_007576_170 Hb_007576_170 Hb_003050_280--Hb_007576_170 Hb_000224_140--Hb_068056_030 Hb_001512_080 Hb_001512_080 Hb_000224_140--Hb_001512_080 Hb_001076_020 Hb_001076_020 Hb_000224_140--Hb_001076_020 Hb_005463_140 Hb_005463_140 Hb_000224_140--Hb_005463_140 Hb_068056_030--Hb_002918_290 Hb_006569_100 Hb_006569_100 Hb_068056_030--Hb_006569_100 Hb_068056_030--Hb_001512_080 Hb_068056_030--Hb_005463_140 Hb_000417_260 Hb_000417_260 Hb_068056_030--Hb_000417_260 Hb_002026_120 Hb_002026_120 Hb_000928_130--Hb_002026_120 Hb_000096_150 Hb_000096_150 Hb_000928_130--Hb_000096_150 Hb_000928_130--Hb_000445_490 Hb_023344_050 Hb_023344_050 Hb_000928_130--Hb_023344_050 Hb_001240_020 Hb_001240_020 Hb_000928_130--Hb_001240_020 Hb_002391_220 Hb_002391_220 Hb_000445_490--Hb_002391_220 Hb_000445_490--Hb_001240_020 Hb_000975_230 Hb_000975_230 Hb_000445_490--Hb_000975_230 Hb_000445_490--Hb_000224_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.12316 4.22467 11.895 13.6244 5.73927 9.81673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.6447 49.5474 31.6263 9.54491 22.2818

CAGE analysis