Hb_000318_210

Information

Type -
Description -
Location Contig318: 210206-212524
Sequence    

Annotation

kegg
ID cic:CICLE_v10026727mg
description hypothetical protein
nr
ID XP_012072469.1
description PREDICTED: 40S ribosomal protein S12-like isoform X1 [Jatropha curcas]
swissprot
ID Q9XHS0
description 40S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1
trembl
ID A0A067L2F9
description 40S ribosomal protein S12 OS=Jatropha curcas GN=JCGZ_04897 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33521: 210145-212318 , PASA_asmbl_33522: 211212-211444 , PASA_asmbl_33523: 213253-214907
cDNA
(Sanger)
(ID:Location)		 053_N08.ab1: 210145-212318

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_210 0.0 - - PREDICTED: 40S ribosomal protein S12-like isoform X1 [Jatropha curcas]
2 Hb_000690_190 0.0945251019 - - 40S ribosomal protein S7, putative [Ricinus communis]
3 Hb_002946_190 0.1036715925 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
4 Hb_000185_050 0.104534088 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
5 Hb_002307_180 0.1048859366 - - PREDICTED: rRNA-processing protein EFG1 isoform X2 [Jatropha curcas]
6 Hb_001728_030 0.1057874332 - - 60S ribosomal protein L15 [Populus trichocarpa]
7 Hb_001804_080 0.1070097511 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
8 Hb_000946_090 0.1099733615 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
9 Hb_004041_020 0.110095695 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
10 Hb_002811_170 0.1113203874 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
11 Hb_161574_020 0.1127688316 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
12 Hb_000359_150 0.1168190421 - - PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]
13 Hb_006326_040 0.1199360663 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002171_060 0.1218591778 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001931_010 0.1228747514 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
16 Hb_032202_100 0.1230899798 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
17 Hb_015299_030 0.1236816316 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
18 Hb_001016_150 0.1241319444 - - Rop1 [Hevea brasiliensis]
19 Hb_001431_080 0.125071763 - - 40S ribosomal protein S11, putative [Ricinus communis]
20 Hb_004889_020 0.1270369029 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000318_210 Hb_000318_210 Hb_000690_190 Hb_000690_190 Hb_000318_210--Hb_000690_190 Hb_002946_190 Hb_002946_190 Hb_000318_210--Hb_002946_190 Hb_000185_050 Hb_000185_050 Hb_000318_210--Hb_000185_050 Hb_002307_180 Hb_002307_180 Hb_000318_210--Hb_002307_180 Hb_001728_030 Hb_001728_030 Hb_000318_210--Hb_001728_030 Hb_001804_080 Hb_001804_080 Hb_000318_210--Hb_001804_080 Hb_000690_190--Hb_002946_190 Hb_000690_190--Hb_002307_180 Hb_000599_260 Hb_000599_260 Hb_000690_190--Hb_000599_260 Hb_007878_010 Hb_007878_010 Hb_000690_190--Hb_007878_010 Hb_161574_020 Hb_161574_020 Hb_000690_190--Hb_161574_020 Hb_002171_060 Hb_002171_060 Hb_000690_190--Hb_002171_060 Hb_004041_020 Hb_004041_020 Hb_002946_190--Hb_004041_020 Hb_001863_380 Hb_001863_380 Hb_002946_190--Hb_001863_380 Hb_146673_010 Hb_146673_010 Hb_002946_190--Hb_146673_010 Hb_000413_240 Hb_000413_240 Hb_002946_190--Hb_000413_240 Hb_001472_100 Hb_001472_100 Hb_002946_190--Hb_001472_100 Hb_000185_050--Hb_001472_100 Hb_000185_050--Hb_002946_190 Hb_000731_160 Hb_000731_160 Hb_000185_050--Hb_000731_160 Hb_111036_010 Hb_111036_010 Hb_000185_050--Hb_111036_010 Hb_000185_050--Hb_000690_190 Hb_003942_020 Hb_003942_020 Hb_000185_050--Hb_003942_020 Hb_002307_180--Hb_000599_260 Hb_012565_070 Hb_012565_070 Hb_002307_180--Hb_012565_070 Hb_000270_310 Hb_000270_310 Hb_002307_180--Hb_000270_310 Hb_000270_470 Hb_000270_470 Hb_002307_180--Hb_000270_470 Hb_032202_100 Hb_032202_100 Hb_002307_180--Hb_032202_100 Hb_000836_470 Hb_000836_470 Hb_001728_030--Hb_000836_470 Hb_002811_170 Hb_002811_170 Hb_001728_030--Hb_002811_170 Hb_002078_140 Hb_002078_140 Hb_001728_030--Hb_002078_140 Hb_001016_150 Hb_001016_150 Hb_001728_030--Hb_001016_150 Hb_000172_320 Hb_000172_320 Hb_001728_030--Hb_000172_320 Hb_001989_090 Hb_001989_090 Hb_001728_030--Hb_001989_090 Hb_000946_090 Hb_000946_090 Hb_001804_080--Hb_000946_090 Hb_000116_490 Hb_000116_490 Hb_001804_080--Hb_000116_490 Hb_001804_080--Hb_032202_100 Hb_001804_080--Hb_000270_310 Hb_001804_080--Hb_002307_180 Hb_005245_120 Hb_005245_120 Hb_001804_080--Hb_005245_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.1687 15.7063 72.308 44.4254 24.1973 36.5445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.2181 88.9292 32.0806 36.1055 17.8522

CAGE analysis