Hb_000318_220

Information

Type -
Description -
Location Contig318: 213173-218872
Sequence    

Annotation

kegg
ID rcu:RCOM_0939550
description hypothetical protein
nr
ID XP_002519153.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RZI4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0939550 PE=4 SV=1
Gene Ontology
ID GO:0005829
description bat2 domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33523: 213253-214907 , PASA_asmbl_33524: 214495-214711 , PASA_asmbl_33525: 218537-218805
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_220 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000327_330 0.0681846521 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001799_160 0.0708671699 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_003883_010 0.0767388266 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
5 Hb_002218_020 0.07785344 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
6 Hb_001504_010 0.0815358271 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
7 Hb_001053_190 0.0828550005 - - ADP,ATP carrier protein, putative [Ricinus communis]
8 Hb_000003_680 0.0842120878 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
9 Hb_000029_400 0.0848323982 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
10 Hb_000788_030 0.0849693207 - - PREDICTED: dynamin-2A [Jatropha curcas]
11 Hb_003687_080 0.0876578126 - - PREDICTED: casein kinase I-like [Jatropha curcas]
12 Hb_003506_030 0.0884857359 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
13 Hb_001703_040 0.0921567935 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
14 Hb_000086_270 0.0941331094 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
15 Hb_021596_020 0.0949179787 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
16 Hb_000787_080 0.0953288119 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
17 Hb_087313_010 0.0960901818 - - conserved hypothetical protein [Ricinus communis]
18 Hb_012438_030 0.0968731039 - - PREDICTED: protein sym-1 [Jatropha curcas]
19 Hb_012779_080 0.0970469455 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
20 Hb_002915_010 0.0975171997 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000318_220 Hb_000318_220 Hb_000327_330 Hb_000327_330 Hb_000318_220--Hb_000327_330 Hb_001799_160 Hb_001799_160 Hb_000318_220--Hb_001799_160 Hb_003883_010 Hb_003883_010 Hb_000318_220--Hb_003883_010 Hb_002218_020 Hb_002218_020 Hb_000318_220--Hb_002218_020 Hb_001504_010 Hb_001504_010 Hb_000318_220--Hb_001504_010 Hb_001053_190 Hb_001053_190 Hb_000318_220--Hb_001053_190 Hb_003687_080 Hb_003687_080 Hb_000327_330--Hb_003687_080 Hb_001623_490 Hb_001623_490 Hb_000327_330--Hb_001623_490 Hb_000086_270 Hb_000086_270 Hb_000327_330--Hb_000086_270 Hb_000327_330--Hb_002218_020 Hb_003071_030 Hb_003071_030 Hb_000327_330--Hb_003071_030 Hb_003498_100 Hb_003498_100 Hb_001799_160--Hb_003498_100 Hb_000120_890 Hb_000120_890 Hb_001799_160--Hb_000120_890 Hb_001799_160--Hb_001504_010 Hb_007483_070 Hb_007483_070 Hb_001799_160--Hb_007483_070 Hb_001799_160--Hb_001053_190 Hb_002107_050 Hb_002107_050 Hb_003883_010--Hb_002107_050 Hb_000680_010 Hb_000680_010 Hb_003883_010--Hb_000680_010 Hb_002915_010 Hb_002915_010 Hb_003883_010--Hb_002915_010 Hb_005235_070 Hb_005235_070 Hb_003883_010--Hb_005235_070 Hb_003883_010--Hb_002218_020 Hb_102948_010 Hb_102948_010 Hb_002218_020--Hb_102948_010 Hb_001430_020 Hb_001430_020 Hb_002218_020--Hb_001430_020 Hb_012438_030 Hb_012438_030 Hb_002218_020--Hb_012438_030 Hb_087313_010 Hb_087313_010 Hb_002218_020--Hb_087313_010 Hb_000663_020 Hb_000663_020 Hb_002218_020--Hb_000663_020 Hb_001504_010--Hb_007483_070 Hb_021596_020 Hb_021596_020 Hb_001504_010--Hb_021596_020 Hb_000163_260 Hb_000163_260 Hb_001504_010--Hb_000163_260 Hb_000579_080 Hb_000579_080 Hb_001504_010--Hb_000579_080 Hb_008304_020 Hb_008304_020 Hb_001504_010--Hb_008304_020 Hb_000815_300 Hb_000815_300 Hb_001504_010--Hb_000815_300 Hb_002686_080 Hb_002686_080 Hb_001053_190--Hb_002686_080 Hb_003540_050 Hb_003540_050 Hb_001053_190--Hb_003540_050 Hb_000724_020 Hb_000724_020 Hb_001053_190--Hb_000724_020 Hb_000029_400 Hb_000029_400 Hb_001053_190--Hb_000029_400 Hb_016448_010 Hb_016448_010 Hb_001053_190--Hb_016448_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.30572 5.83623 14.5043 9.13268 3.63198 2.01787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.28113 4.16454 3.13995 3.88549 8.98571

CAGE analysis