Hb_000318_240

Information

Type -
Description -
Location Contig318: 221824-223228
Sequence    

Annotation

kegg
ID rcu:RCOM_0939520
description hypothetical protein
nr
ID XP_002519150.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RZI1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0939520 PE=4 SV=1
Gene Ontology
ID GO:0009507
description maternal effect embryo arrest 14 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33526: 221880-223176
cDNA
(Sanger)
(ID:Location)		 003_C09.ab1: 221896-223085 , 031_M04.ab1: 222014-223176 , 048_F18.ab1: 221896-223085

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002686_330 0.1848246582 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
3 Hb_008725_140 0.1858209597 - - PREDICTED: kynurenine--oxoglutarate transaminase-like isoform X1 [Jatropha curcas]
4 Hb_003026_030 0.1866558382 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
5 Hb_000189_430 0.1971916273 - - unnamed protein product [Vitis vinifera]
6 Hb_001269_510 0.2010516096 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
7 Hb_000997_150 0.2031463147 - - ankyrin repeat-containing protein, putative [Ricinus communis]
8 Hb_000988_030 0.2060263702 - - conserved hypothetical protein [Ricinus communis]
9 Hb_069841_010 0.2071536399 - - resistance protein [Quercus suber]
10 Hb_000170_060 0.2165521363 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639010 [Jatropha curcas]
11 Hb_000538_260 0.2171021881 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
12 Hb_002450_140 0.2214370252 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
13 Hb_004176_060 0.221553311 - - -
14 Hb_000505_110 0.2219890056 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
15 Hb_002890_150 0.2229057102 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
16 Hb_149838_010 0.2229406954 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
17 Hb_000345_490 0.224135988 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
18 Hb_014497_030 0.2255991311 - - PREDICTED: mitotic spindle checkpoint protein BUBR1 [Jatropha curcas]
19 Hb_001105_050 0.2257121737 - - PREDICTED: uncharacterized protein LOC105642744 isoform X1 [Jatropha curcas]
20 Hb_000024_120 0.2259816338 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000318_240 Hb_000318_240 Hb_002686_330 Hb_002686_330 Hb_000318_240--Hb_002686_330 Hb_008725_140 Hb_008725_140 Hb_000318_240--Hb_008725_140 Hb_003026_030 Hb_003026_030 Hb_000318_240--Hb_003026_030 Hb_000189_430 Hb_000189_430 Hb_000318_240--Hb_000189_430 Hb_001269_510 Hb_001269_510 Hb_000318_240--Hb_001269_510 Hb_000997_150 Hb_000997_150 Hb_000318_240--Hb_000997_150 Hb_002708_020 Hb_002708_020 Hb_002686_330--Hb_002708_020 Hb_027402_090 Hb_027402_090 Hb_002686_330--Hb_027402_090 Hb_000024_070 Hb_000024_070 Hb_002686_330--Hb_000024_070 Hb_008246_030 Hb_008246_030 Hb_002686_330--Hb_008246_030 Hb_000170_060 Hb_000170_060 Hb_002686_330--Hb_000170_060 Hb_149838_010 Hb_149838_010 Hb_002686_330--Hb_149838_010 Hb_002249_040 Hb_002249_040 Hb_008725_140--Hb_002249_040 Hb_002265_010 Hb_002265_010 Hb_008725_140--Hb_002265_010 Hb_000424_070 Hb_000424_070 Hb_008725_140--Hb_000424_070 Hb_000538_260 Hb_000538_260 Hb_008725_140--Hb_000538_260 Hb_011609_010 Hb_011609_010 Hb_008725_140--Hb_011609_010 Hb_006618_070 Hb_006618_070 Hb_008725_140--Hb_006618_070 Hb_000264_180 Hb_000264_180 Hb_003026_030--Hb_000264_180 Hb_044155_010 Hb_044155_010 Hb_003026_030--Hb_044155_010 Hb_002400_230 Hb_002400_230 Hb_003026_030--Hb_002400_230 Hb_002291_060 Hb_002291_060 Hb_003026_030--Hb_002291_060 Hb_003026_030--Hb_000997_150 Hb_002450_140 Hb_002450_140 Hb_003026_030--Hb_002450_140 Hb_129459_010 Hb_129459_010 Hb_000189_430--Hb_129459_010 Hb_001767_040 Hb_001767_040 Hb_000189_430--Hb_001767_040 Hb_001269_310 Hb_001269_310 Hb_000189_430--Hb_001269_310 Hb_005548_030 Hb_005548_030 Hb_000189_430--Hb_005548_030 Hb_000189_430--Hb_000997_150 Hb_001269_510--Hb_002450_140 Hb_001269_510--Hb_000424_070 Hb_001776_200 Hb_001776_200 Hb_001269_510--Hb_001776_200 Hb_000058_050 Hb_000058_050 Hb_001269_510--Hb_000058_050 Hb_000313_290 Hb_000313_290 Hb_001269_510--Hb_000313_290 Hb_001269_510--Hb_003026_030 Hb_000732_070 Hb_000732_070 Hb_000997_150--Hb_000732_070 Hb_001454_220 Hb_001454_220 Hb_000997_150--Hb_001454_220 Hb_000997_150--Hb_001269_310 Hb_000997_150--Hb_002400_230 Hb_000997_150--Hb_044155_010 Hb_000185_150 Hb_000185_150 Hb_000997_150--Hb_000185_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.16836 7.05013 11.2529 1.84373 8.81485 5.93012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.358303 0.281802 0 0.712471 3.95084

CAGE analysis