Hb_000318_250

Information

Type -
Description -
Location Contig318: 229470-249489
Sequence    

Annotation

kegg
ID rcu:RCOM_0939510
description hypothetical protein
nr
ID XP_012072476.1
description PREDICTED: uncharacterized protein LOC105634251 [Jatropha curcas]
swissprot
ID Q8C080
description Sorting nexin-16 OS=Mus musculus GN=Snx16 PE=1 SV=2
trembl
ID A0A067KTJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04901 PE=4 SV=1
Gene Ontology
ID GO:0035091
description phox-associated - c- isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33527: 229509-231189 , PASA_asmbl_33528: 231413-241040 , PASA_asmbl_33529: 241197-242490 , PASA_asmbl_33530: 242615-245238 , PASA_asmbl_33531: 247998-249094
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_250 0.0 - - PREDICTED: uncharacterized protein LOC105634251 [Jatropha curcas]
2 Hb_001546_080 0.0245193639 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
3 Hb_000130_410 0.0634243599 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
4 Hb_000868_090 0.064956247 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
5 Hb_000732_010 0.0690409786 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
6 Hb_000317_050 0.0690649369 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
7 Hb_000329_710 0.070449907 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
8 Hb_003680_120 0.0728289762 - - PREDICTED: E3 ubiquitin-protein ligase UPL7 [Jatropha curcas]
9 Hb_003030_060 0.0735240696 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
10 Hb_006478_040 0.0741969471 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
11 Hb_000665_100 0.0748493478 - - PREDICTED: neurochondrin [Jatropha curcas]
12 Hb_007765_110 0.0748639768 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
13 Hb_007035_050 0.0759022449 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
14 Hb_001369_730 0.0764200425 - - F5O11.10, putative isoform 1 [Theobroma cacao]
15 Hb_167498_010 0.0773970513 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
16 Hb_005489_020 0.0777181741 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000708_030 0.0780700662 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
18 Hb_008959_020 0.0782623925 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
19 Hb_002890_290 0.0789586818 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
20 Hb_000049_260 0.079954863 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000318_250 Hb_000318_250 Hb_001546_080 Hb_001546_080 Hb_000318_250--Hb_001546_080 Hb_000130_410 Hb_000130_410 Hb_000318_250--Hb_000130_410 Hb_000868_090 Hb_000868_090 Hb_000318_250--Hb_000868_090 Hb_000732_010 Hb_000732_010 Hb_000318_250--Hb_000732_010 Hb_000317_050 Hb_000317_050 Hb_000318_250--Hb_000317_050 Hb_000329_710 Hb_000329_710 Hb_000318_250--Hb_000329_710 Hb_001546_080--Hb_000317_050 Hb_003030_060 Hb_003030_060 Hb_001546_080--Hb_003030_060 Hb_001546_080--Hb_000329_710 Hb_006478_040 Hb_006478_040 Hb_001546_080--Hb_006478_040 Hb_005489_020 Hb_005489_020 Hb_001546_080--Hb_005489_020 Hb_002026_210 Hb_002026_210 Hb_000130_410--Hb_002026_210 Hb_001396_200 Hb_001396_200 Hb_000130_410--Hb_001396_200 Hb_000708_030 Hb_000708_030 Hb_000130_410--Hb_000708_030 Hb_004324_130 Hb_004324_130 Hb_000130_410--Hb_004324_130 Hb_000130_410--Hb_001546_080 Hb_007765_110 Hb_007765_110 Hb_000868_090--Hb_007765_110 Hb_019863_070 Hb_019863_070 Hb_000868_090--Hb_019863_070 Hb_002818_030 Hb_002818_030 Hb_000868_090--Hb_002818_030 Hb_003464_090 Hb_003464_090 Hb_000868_090--Hb_003464_090 Hb_003906_200 Hb_003906_200 Hb_000868_090--Hb_003906_200 Hb_002232_410 Hb_002232_410 Hb_000732_010--Hb_002232_410 Hb_065525_040 Hb_065525_040 Hb_000732_010--Hb_065525_040 Hb_000331_550 Hb_000331_550 Hb_000732_010--Hb_000331_550 Hb_002205_110 Hb_002205_110 Hb_000732_010--Hb_002205_110 Hb_000732_010--Hb_000708_030 Hb_001205_240 Hb_001205_240 Hb_000732_010--Hb_001205_240 Hb_002592_060 Hb_002592_060 Hb_000317_050--Hb_002592_060 Hb_001307_220 Hb_001307_220 Hb_000317_050--Hb_001307_220 Hb_000317_050--Hb_000329_710 Hb_002263_020 Hb_002263_020 Hb_000317_050--Hb_002263_020 Hb_000792_010 Hb_000792_010 Hb_000329_710--Hb_000792_010 Hb_011386_010 Hb_011386_010 Hb_000329_710--Hb_011386_010 Hb_001004_060 Hb_001004_060 Hb_000329_710--Hb_001004_060 Hb_002518_260 Hb_002518_260 Hb_000329_710--Hb_002518_260 Hb_009486_140 Hb_009486_140 Hb_000329_710--Hb_009486_140 Hb_000041_110 Hb_000041_110 Hb_000329_710--Hb_000041_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.4751 9.99553 5.33429 5.71026 6.80527 7.30743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.03354 8.48193 6.54771 6.22088 7.96122

CAGE analysis