Hb_000318_260

Information

Type -
Description -
Location Contig318: 250619-256127
Sequence    

Annotation

kegg
ID pop:POPTR_0009s11160g
description POPTRDRAFT_767508; hypothetical protein
nr
ID XP_012072477.1
description PREDICTED: cell division cycle-associated 7-like protein [Jatropha curcas]
swissprot
ID Q96GN5
description Cell division cycle-associated 7-like protein OS=Homo sapiens GN=CDCA7L PE=1 SV=2
trembl
ID A0A067L2G2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04902 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_260 0.0 - - PREDICTED: cell division cycle-associated 7-like protein [Jatropha curcas]
2 Hb_004712_110 0.1735872174 - - 30S ribosomal protein S10, putative [Ricinus communis]
3 Hb_000987_050 0.1738065264 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
4 Hb_000424_160 0.1769820731 - - hypothetical protein POPTR_0006s23570g [Populus trichocarpa]
5 Hb_000317_080 0.1784656175 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
6 Hb_000088_030 0.180240772 - - hypothetical protein JCGZ_10947 [Jatropha curcas]
7 Hb_000976_180 0.183114152 - - PREDICTED: uncharacterized protein LOC102592049 [Solanum tuberosum]
8 Hb_053543_010 0.1879408127 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000173_210 0.1901887198 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
10 Hb_179511_010 0.1922265469 - - -
11 Hb_000580_130 0.1995916248 - - hypothetical protein JCGZ_14541 [Jatropha curcas]
12 Hb_002903_120 0.20138922 - - -
13 Hb_005928_080 0.2063692986 - - PREDICTED: probable galacturonosyltransferase 6 isoform X1 [Jatropha curcas]
14 Hb_001946_360 0.2066824204 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
15 Hb_000062_380 0.2079266681 - - PREDICTED: putative F-box protein At1g67623 [Jatropha curcas]
16 Hb_004032_050 0.2079648338 - - hypothetical protein CISIN_1g014592mg [Citrus sinensis]
17 Hb_085375_010 0.2081534382 - - protein with unknown function [Ricinus communis]
18 Hb_004659_070 0.2088352419 - - PREDICTED: organ-specific protein P4-like [Vitis vinifera]
19 Hb_000008_230 0.2095125529 - - hypothetical protein POPTR_0004s22120g [Populus trichocarpa]
20 Hb_005228_120 0.2099099013 - - phospholipase d beta, putative [Ricinus communis]

Gene co-expression network

sample Hb_000318_260 Hb_000318_260 Hb_004712_110 Hb_004712_110 Hb_000318_260--Hb_004712_110 Hb_000987_050 Hb_000987_050 Hb_000318_260--Hb_000987_050 Hb_000424_160 Hb_000424_160 Hb_000318_260--Hb_000424_160 Hb_000317_080 Hb_000317_080 Hb_000318_260--Hb_000317_080 Hb_000088_030 Hb_000088_030 Hb_000318_260--Hb_000088_030 Hb_000976_180 Hb_000976_180 Hb_000318_260--Hb_000976_180 Hb_099698_010 Hb_099698_010 Hb_004712_110--Hb_099698_010 Hb_000040_050 Hb_000040_050 Hb_004712_110--Hb_000040_050 Hb_000173_210 Hb_000173_210 Hb_004712_110--Hb_000173_210 Hb_005228_120 Hb_005228_120 Hb_004712_110--Hb_005228_120 Hb_001534_070 Hb_001534_070 Hb_004712_110--Hb_001534_070 Hb_000940_040 Hb_000940_040 Hb_004712_110--Hb_000940_040 Hb_053543_010 Hb_053543_010 Hb_000987_050--Hb_053543_010 Hb_000987_050--Hb_000317_080 Hb_010931_110 Hb_010931_110 Hb_000987_050--Hb_010931_110 Hb_130177_010 Hb_130177_010 Hb_000987_050--Hb_130177_010 Hb_043959_010 Hb_043959_010 Hb_000987_050--Hb_043959_010 Hb_098315_110 Hb_098315_110 Hb_000987_050--Hb_098315_110 Hb_085375_010 Hb_085375_010 Hb_000424_160--Hb_085375_010 Hb_000424_160--Hb_000976_180 Hb_000345_120 Hb_000345_120 Hb_000424_160--Hb_000345_120 Hb_003320_030 Hb_003320_030 Hb_000424_160--Hb_003320_030 Hb_000424_160--Hb_004712_110 Hb_001268_230 Hb_001268_230 Hb_000317_080--Hb_001268_230 Hb_000317_080--Hb_098315_110 Hb_000317_080--Hb_053543_010 Hb_004648_040 Hb_004648_040 Hb_000317_080--Hb_004648_040 Hb_001628_110 Hb_001628_110 Hb_000317_080--Hb_001628_110 Hb_140595_010 Hb_140595_010 Hb_000088_030--Hb_140595_010 Hb_002903_120 Hb_002903_120 Hb_000088_030--Hb_002903_120 Hb_002483_020 Hb_002483_020 Hb_000088_030--Hb_002483_020 Hb_045502_010 Hb_045502_010 Hb_000088_030--Hb_045502_010 Hb_000580_130 Hb_000580_130 Hb_000088_030--Hb_000580_130 Hb_004659_070 Hb_004659_070 Hb_000976_180--Hb_004659_070 Hb_000976_180--Hb_000987_050 Hb_000976_180--Hb_000317_080 Hb_011515_030 Hb_011515_030 Hb_000976_180--Hb_011515_030 Hb_000976_180--Hb_053543_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.48289 0.415338 2.30978 0.668243 15.7624 4.44532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.62771 1.62414 0.771538 0.508071 0.367966

CAGE analysis