Hb_000318_290

Information

Type transcription factor
Description TF Family: B3
Location Contig318: 265873-285784
Sequence    

Annotation

kegg
ID rcu:RCOM_0939220
description sulfotransferase, putative
nr
ID XP_012069205.1
description PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
swissprot
ID Q8L3W1
description B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=1 SV=1
trembl
ID A0A067LCQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10017 PE=4 SV=1
Gene Ontology
ID GO:0005634
description b3 domain-containing transcription factor vrn1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33536: 263912-267449 , PASA_asmbl_33537: 279423-279890 , PASA_asmbl_33538: 280687-280821
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_290 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
2 Hb_003777_310 0.0361182774 - - conserved hypothetical protein [Ricinus communis]
3 Hb_054865_150 0.0595363185 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
4 Hb_000608_320 0.0616757873 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
5 Hb_004032_150 0.0620581989 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
6 Hb_000120_670 0.0653876445 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
7 Hb_004767_100 0.0671766876 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
8 Hb_002445_120 0.0676832673 - - secretory carrier membrane protein, putative [Ricinus communis]
9 Hb_000185_040 0.0688888391 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
10 Hb_002716_130 0.0693581924 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
11 Hb_005170_040 0.0717467156 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
12 Hb_002740_180 0.0725099301 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002027_290 0.0742824942 - - PREDICTED: NPL4-like protein 1 [Jatropha curcas]
14 Hb_007638_030 0.0760709879 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
15 Hb_003750_050 0.0761270792 - - PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]
16 Hb_000127_040 0.0783841778 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
17 Hb_002675_070 0.0788802478 - - PREDICTED: protein CASC3 [Jatropha curcas]
18 Hb_010964_040 0.0793685433 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
19 Hb_002213_070 0.0802332314 - - epsilon-adaptin family protein [Populus trichocarpa]
20 Hb_011485_070 0.080705872 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000318_290 Hb_000318_290 Hb_003777_310 Hb_003777_310 Hb_000318_290--Hb_003777_310 Hb_054865_150 Hb_054865_150 Hb_000318_290--Hb_054865_150 Hb_000608_320 Hb_000608_320 Hb_000318_290--Hb_000608_320 Hb_004032_150 Hb_004032_150 Hb_000318_290--Hb_004032_150 Hb_000120_670 Hb_000120_670 Hb_000318_290--Hb_000120_670 Hb_004767_100 Hb_004767_100 Hb_000318_290--Hb_004767_100 Hb_002445_120 Hb_002445_120 Hb_003777_310--Hb_002445_120 Hb_005170_040 Hb_005170_040 Hb_003777_310--Hb_005170_040 Hb_023001_060 Hb_023001_060 Hb_003777_310--Hb_023001_060 Hb_003777_310--Hb_000608_320 Hb_003777_310--Hb_004032_150 Hb_011037_030 Hb_011037_030 Hb_054865_150--Hb_011037_030 Hb_000156_010 Hb_000156_010 Hb_054865_150--Hb_000156_010 Hb_000172_290 Hb_000172_290 Hb_054865_150--Hb_000172_290 Hb_000254_090 Hb_000254_090 Hb_054865_150--Hb_000254_090 Hb_002110_190 Hb_002110_190 Hb_054865_150--Hb_002110_190 Hb_002027_290 Hb_002027_290 Hb_000608_320--Hb_002027_290 Hb_000608_320--Hb_005170_040 Hb_002716_130 Hb_002716_130 Hb_000608_320--Hb_002716_130 Hb_002811_060 Hb_002811_060 Hb_000608_320--Hb_002811_060 Hb_004032_150--Hb_004767_100 Hb_007416_280 Hb_007416_280 Hb_004032_150--Hb_007416_280 Hb_001638_170 Hb_001638_170 Hb_004032_150--Hb_001638_170 Hb_148644_010 Hb_148644_010 Hb_004032_150--Hb_148644_010 Hb_001489_150 Hb_001489_150 Hb_004032_150--Hb_001489_150 Hb_003750_050 Hb_003750_050 Hb_000120_670--Hb_003750_050 Hb_000580_180 Hb_000580_180 Hb_000120_670--Hb_000580_180 Hb_003964_070 Hb_003964_070 Hb_000120_670--Hb_003964_070 Hb_000019_030 Hb_000019_030 Hb_000120_670--Hb_000019_030 Hb_001279_150 Hb_001279_150 Hb_000120_670--Hb_001279_150 Hb_000345_240 Hb_000345_240 Hb_000120_670--Hb_000345_240 Hb_000608_240 Hb_000608_240 Hb_004767_100--Hb_000608_240 Hb_004767_100--Hb_005170_040 Hb_004767_100--Hb_148644_010 Hb_000205_300 Hb_000205_300 Hb_004767_100--Hb_000205_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.17621 1.10137 0.775671 2.0063 1.73724 2.51347
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.65371 1.61382 1.87995 1.56553 1.09104

CAGE analysis