Hb_000318_310

Information

Type -
Description -
Location Contig318: 304687-305055
Sequence    

Annotation

kegg
ID pop:POPTR_0009s11190g
description hypothetical protein
nr
ID XP_006379220.1
description hypothetical protein POPTR_0009s11190g [Populus trichocarpa]
swissprot
ID P80883
description Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea GN=petM PE=1 SV=1
trembl
ID U5G6E5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s11190g PE=3 SV=1
Gene Ontology
ID GO:0009512
description cytochrome b6-f complex subunit 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33540: 304496-305218
cDNA
(Sanger)
(ID:Location)		 042_H16.ab1: 304541-305188 , 050_C10.ab1: 304496-305075

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_310 0.0 - - hypothetical protein POPTR_0009s11190g [Populus trichocarpa]
2 Hb_001981_050 0.0426302864 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
3 Hb_185811_010 0.0475701783 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
4 Hb_003855_060 0.0622934758 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
5 Hb_007904_150 0.0690749786 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
6 Hb_000917_300 0.0697741009 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
7 Hb_004459_010 0.0721486416 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
8 Hb_000803_080 0.0792765825 desease resistance Gene Name: ABC_tran ATP-binding cassette transporter, putative [Ricinus communis]
9 Hb_000915_170 0.0808275591 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
10 Hb_000326_120 0.0808744435 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
11 Hb_002740_050 0.0820011282 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
12 Hb_012098_120 0.0842860206 - - PREDICTED: putative elongation of fatty acids protein DDB_G0272012 [Jatropha curcas]
13 Hb_005839_040 0.0844661467 - - hypothetical protein POPTR_0019s08420g [Populus trichocarpa]
14 Hb_001926_080 0.0848213022 - - PREDICTED: uncharacterized protein LOC103454919 [Malus domestica]
15 Hb_001345_050 0.0852621866 - - hypothetical protein POPTR_0014s14480g [Populus trichocarpa]
16 Hb_072771_010 0.0856171415 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
17 Hb_166718_010 0.0860645337 - - heat-shock protein, putative [Ricinus communis]
18 Hb_132880_010 0.0862100233 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
19 Hb_001278_120 0.0870214239 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
20 Hb_002391_010 0.0875773424 - - PREDICTED: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]

Gene co-expression network

sample Hb_000318_310 Hb_000318_310 Hb_001981_050 Hb_001981_050 Hb_000318_310--Hb_001981_050 Hb_185811_010 Hb_185811_010 Hb_000318_310--Hb_185811_010 Hb_003855_060 Hb_003855_060 Hb_000318_310--Hb_003855_060 Hb_007904_150 Hb_007904_150 Hb_000318_310--Hb_007904_150 Hb_000917_300 Hb_000917_300 Hb_000318_310--Hb_000917_300 Hb_004459_010 Hb_004459_010 Hb_000318_310--Hb_004459_010 Hb_001981_050--Hb_185811_010 Hb_001981_050--Hb_003855_060 Hb_001981_050--Hb_007904_150 Hb_001981_050--Hb_004459_010 Hb_001981_050--Hb_000917_300 Hb_001345_050 Hb_001345_050 Hb_185811_010--Hb_001345_050 Hb_072771_010 Hb_072771_010 Hb_185811_010--Hb_072771_010 Hb_004807_010 Hb_004807_010 Hb_185811_010--Hb_004807_010 Hb_185811_010--Hb_003855_060 Hb_002740_050 Hb_002740_050 Hb_003855_060--Hb_002740_050 Hb_003855_060--Hb_007904_150 Hb_004943_020 Hb_004943_020 Hb_003855_060--Hb_004943_020 Hb_007904_150--Hb_002740_050 Hb_000915_170 Hb_000915_170 Hb_007904_150--Hb_000915_170 Hb_007904_150--Hb_185811_010 Hb_000917_300--Hb_004459_010 Hb_000232_040 Hb_000232_040 Hb_000917_300--Hb_000232_040 Hb_000917_300--Hb_185811_010 Hb_132880_010 Hb_132880_010 Hb_000917_300--Hb_132880_010 Hb_001278_120 Hb_001278_120 Hb_004459_010--Hb_001278_120 Hb_004459_010--Hb_003855_060 Hb_095744_010 Hb_095744_010 Hb_004459_010--Hb_095744_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.12951 4.14702 160.031 288.72 0.185677 0.0902543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.87117 0.551282 0 2.64675 328.623

CAGE analysis