Hb_000318_330

Information

Type -
Description -
Location Contig318: 310456-312405
Sequence    

Annotation

kegg
ID rcu:RCOM_0939010
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012069241.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Jatropha curcas]
swissprot
ID Q9ZQF1
description Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3 SV=1
trembl
ID A0A067LCI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10026 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_330 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Jatropha curcas]
2 Hb_006824_050 0.0774147082 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Jatropha curcas]
3 Hb_025557_030 0.080687467 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
4 Hb_004607_030 0.1048379829 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
5 Hb_004846_070 0.1174046544 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Populus euphratica]
6 Hb_001969_090 0.1177551552 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
7 Hb_002878_020 0.118445434 - - mitochondrial carrier protein, putative [Ricinus communis]
8 Hb_000206_240 0.1192716286 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001959_190 0.1225206835 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
10 Hb_002218_010 0.1235971427 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
11 Hb_004375_150 0.1245423868 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
12 Hb_000367_260 0.1251838641 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
13 Hb_016901_010 0.1252179679 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
14 Hb_000002_050 0.1264570146 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]
15 Hb_002585_020 0.1266478923 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like [Populus euphratica]
16 Hb_000107_420 0.127875897 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
17 Hb_000340_390 0.1281492735 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
18 Hb_002496_040 0.1281952221 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03380, mitochondrial [Jatropha curcas]
19 Hb_027472_170 0.1287518007 - - hypothetical protein POPTR_0007s08080g [Populus trichocarpa]
20 Hb_001454_190 0.1292567697 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]

Gene co-expression network

sample Hb_000318_330 Hb_000318_330 Hb_006824_050 Hb_006824_050 Hb_000318_330--Hb_006824_050 Hb_025557_030 Hb_025557_030 Hb_000318_330--Hb_025557_030 Hb_004607_030 Hb_004607_030 Hb_000318_330--Hb_004607_030 Hb_004846_070 Hb_004846_070 Hb_000318_330--Hb_004846_070 Hb_001969_090 Hb_001969_090 Hb_000318_330--Hb_001969_090 Hb_002878_020 Hb_002878_020 Hb_000318_330--Hb_002878_020 Hb_001959_190 Hb_001959_190 Hb_006824_050--Hb_001959_190 Hb_002585_020 Hb_002585_020 Hb_006824_050--Hb_002585_020 Hb_000367_260 Hb_000367_260 Hb_006824_050--Hb_000367_260 Hb_006824_050--Hb_002878_020 Hb_009803_050 Hb_009803_050 Hb_006824_050--Hb_009803_050 Hb_025557_030--Hb_004607_030 Hb_027472_170 Hb_027472_170 Hb_025557_030--Hb_027472_170 Hb_000019_130 Hb_000019_130 Hb_025557_030--Hb_000019_130 Hb_004375_150 Hb_004375_150 Hb_025557_030--Hb_004375_150 Hb_011030_020 Hb_011030_020 Hb_025557_030--Hb_011030_020 Hb_004607_030--Hb_001959_190 Hb_000696_040 Hb_000696_040 Hb_004607_030--Hb_000696_040 Hb_000567_120 Hb_000567_120 Hb_004607_030--Hb_000567_120 Hb_010608_050 Hb_010608_050 Hb_004607_030--Hb_010608_050 Hb_008695_100 Hb_008695_100 Hb_004607_030--Hb_008695_100 Hb_000206_240 Hb_000206_240 Hb_004846_070--Hb_000206_240 Hb_001090_050 Hb_001090_050 Hb_004846_070--Hb_001090_050 Hb_013607_040 Hb_013607_040 Hb_004846_070--Hb_013607_040 Hb_000002_050 Hb_000002_050 Hb_004846_070--Hb_000002_050 Hb_002307_170 Hb_002307_170 Hb_004846_070--Hb_002307_170 Hb_004846_070--Hb_008695_100 Hb_007747_200 Hb_007747_200 Hb_001969_090--Hb_007747_200 Hb_000317_280 Hb_000317_280 Hb_001969_090--Hb_000317_280 Hb_000575_150 Hb_000575_150 Hb_001969_090--Hb_000575_150 Hb_003687_240 Hb_003687_240 Hb_001969_090--Hb_003687_240 Hb_010883_090 Hb_010883_090 Hb_001969_090--Hb_010883_090 Hb_000805_020 Hb_000805_020 Hb_001969_090--Hb_000805_020 Hb_000250_060 Hb_000250_060 Hb_002878_020--Hb_000250_060 Hb_002878_020--Hb_009803_050 Hb_011214_020 Hb_011214_020 Hb_002878_020--Hb_011214_020 Hb_086639_030 Hb_086639_030 Hb_002878_020--Hb_086639_030 Hb_002878_020--Hb_001959_190 Hb_001633_210 Hb_001633_210 Hb_002878_020--Hb_001633_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.69712 3.23859 0.731698 1.92957 1.15385 2.84187
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.88018 5.15038 7.09503 3.74298 1.81273

CAGE analysis