Hb_000318_380

Information

Type -
Description -
Location Contig318: 358445-358921
Sequence    

Annotation

kegg
ID rcu:RCOM_0939000
description Diphthamide biosynthesis protein, putative
nr
ID XP_012069250.1
description PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]
swissprot
ID P0C0V4
description Diphthamide biosynthesis protein 3 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=dph3 PE=3 SV=1
trembl
ID A0A067LCR6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10027 PE=4 SV=1
Gene Ontology
ID GO:0005634
description diphthamide biosynthesis protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_380 0.0 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]
2 Hb_000152_430 0.0616537857 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
3 Hb_001824_070 0.0663059525 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
4 Hb_007747_090 0.0709886777 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
5 Hb_000928_240 0.0722948798 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
6 Hb_001477_110 0.0807356054 - - prohibitin, putative [Ricinus communis]
7 Hb_011139_020 0.0815967105 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
8 Hb_000417_110 0.0821079964 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
9 Hb_001584_070 0.0829446354 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003878_190 0.0856027436 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
11 Hb_000580_080 0.0870510262 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
12 Hb_012515_010 0.088609875 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
13 Hb_028486_040 0.0889637515 - - 40S ribosomal protein S14, putative [Ricinus communis]
14 Hb_000977_080 0.0896414419 - - type II inositol 5-phosphatase, putative [Ricinus communis]
15 Hb_001235_210 0.0907154509 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_009711_030 0.0907479987 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
17 Hb_003001_060 0.0910395224 - - wound-responsive family protein [Populus trichocarpa]
18 Hb_001019_090 0.091203008 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
19 Hb_002097_110 0.0913240757 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_002311_350 0.0920790189 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]

Gene co-expression network

sample Hb_000318_380 Hb_000318_380 Hb_000152_430 Hb_000152_430 Hb_000318_380--Hb_000152_430 Hb_001824_070 Hb_001824_070 Hb_000318_380--Hb_001824_070 Hb_007747_090 Hb_007747_090 Hb_000318_380--Hb_007747_090 Hb_000928_240 Hb_000928_240 Hb_000318_380--Hb_000928_240 Hb_001477_110 Hb_001477_110 Hb_000318_380--Hb_001477_110 Hb_011139_020 Hb_011139_020 Hb_000318_380--Hb_011139_020 Hb_000152_430--Hb_011139_020 Hb_001019_090 Hb_001019_090 Hb_000152_430--Hb_001019_090 Hb_025193_050 Hb_025193_050 Hb_000152_430--Hb_025193_050 Hb_024650_050 Hb_024650_050 Hb_000152_430--Hb_024650_050 Hb_000152_430--Hb_000928_240 Hb_001824_070--Hb_001477_110 Hb_009711_030 Hb_009711_030 Hb_001824_070--Hb_009711_030 Hb_001584_070 Hb_001584_070 Hb_001824_070--Hb_001584_070 Hb_003878_190 Hb_003878_190 Hb_001824_070--Hb_003878_190 Hb_000371_080 Hb_000371_080 Hb_001824_070--Hb_000371_080 Hb_000465_060 Hb_000465_060 Hb_001824_070--Hb_000465_060 Hb_143813_010 Hb_143813_010 Hb_007747_090--Hb_143813_010 Hb_000260_050 Hb_000260_050 Hb_007747_090--Hb_000260_050 Hb_000045_130 Hb_000045_130 Hb_007747_090--Hb_000045_130 Hb_001369_650 Hb_001369_650 Hb_007747_090--Hb_001369_650 Hb_000977_080 Hb_000977_080 Hb_007747_090--Hb_000977_080 Hb_125000_010 Hb_125000_010 Hb_000928_240--Hb_125000_010 Hb_000928_240--Hb_001824_070 Hb_000928_240--Hb_003878_190 Hb_000703_140 Hb_000703_140 Hb_000928_240--Hb_000703_140 Hb_002097_110 Hb_002097_110 Hb_000928_240--Hb_002097_110 Hb_000380_190 Hb_000380_190 Hb_001477_110--Hb_000380_190 Hb_002311_350 Hb_002311_350 Hb_001477_110--Hb_002311_350 Hb_001235_210 Hb_001235_210 Hb_001477_110--Hb_001235_210 Hb_000832_140 Hb_000832_140 Hb_001477_110--Hb_000832_140 Hb_000007_100 Hb_000007_100 Hb_001477_110--Hb_000007_100 Hb_012515_010 Hb_012515_010 Hb_011139_020--Hb_012515_010 Hb_011139_020--Hb_025193_050 Hb_011139_020--Hb_024650_050 Hb_004595_020 Hb_004595_020 Hb_011139_020--Hb_004595_020 Hb_001840_120 Hb_001840_120 Hb_011139_020--Hb_001840_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4774 5.67278 4.04292 5.5841 24.6074 28.4238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.1792 39.7991 18.1686 12.8604 1.89778

CAGE analysis