Hb_000318_440

Information

Type -
Description -
Location Contig318: 441414-442862
Sequence    

Annotation

kegg
ID pop:POPTR_0004s15590g
description POPTRDRAFT_759609; hypothetical protein
nr
ID XP_012069311.1
description PREDICTED: allene oxide synthase 2-like [Jatropha curcas]
swissprot
ID Q0PHS9
description 9-divinyl ether synthase OS=Capsicum annuum GN=DES PE=2 SV=1
trembl
ID A0A067LMZ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10035 PE=4 SV=1
Gene Ontology
ID GO:0004497
description allene oxide synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33568: 441794-442080
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_440 0.0 - - PREDICTED: allene oxide synthase 2-like [Jatropha curcas]
2 Hb_039562_010 0.0539957011 - - PREDICTED: protein SRG1-like [Jatropha curcas]
3 Hb_004693_010 0.0601110414 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
4 Hb_000059_100 0.070527332 - - Basic blue protein, putative [Ricinus communis]
5 Hb_007532_050 0.0747534836 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
6 Hb_002805_230 0.0787111921 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
7 Hb_003090_070 0.0793468401 - - PREDICTED: laccase-7 [Jatropha curcas]
8 Hb_000487_150 0.082622563 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
9 Hb_000712_070 0.0868978713 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004037_010 0.088904575 - - PREDICTED: uncharacterized protein LOC105632369 [Jatropha curcas]
11 Hb_058620_050 0.0938977275 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
12 Hb_058620_040 0.0951860653 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
13 Hb_000221_200 0.0958662486 - - hypothetical protein JCGZ_15819 [Jatropha curcas]
14 Hb_002173_080 0.0985554496 - - alcohol dehydrogenase, putative [Ricinus communis]
15 Hb_000127_250 0.0996021764 - - Alliin lyase precursor, putative [Ricinus communis]
16 Hb_000076_200 0.1022798397 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012532_020 0.1024906869 - - Isoflavone reductase, putative [Ricinus communis]
18 Hb_124247_030 0.1025482171 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]
19 Hb_003968_020 0.1039832402 - - PREDICTED: limonoid UDP-glucosyltransferase-like [Glycine max]
20 Hb_000141_070 0.1044157317 - - l-lactate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000318_440 Hb_000318_440 Hb_039562_010 Hb_039562_010 Hb_000318_440--Hb_039562_010 Hb_004693_010 Hb_004693_010 Hb_000318_440--Hb_004693_010 Hb_000059_100 Hb_000059_100 Hb_000318_440--Hb_000059_100 Hb_007532_050 Hb_007532_050 Hb_000318_440--Hb_007532_050 Hb_002805_230 Hb_002805_230 Hb_000318_440--Hb_002805_230 Hb_003090_070 Hb_003090_070 Hb_000318_440--Hb_003090_070 Hb_003968_020 Hb_003968_020 Hb_039562_010--Hb_003968_020 Hb_039562_010--Hb_004693_010 Hb_135392_010 Hb_135392_010 Hb_039562_010--Hb_135392_010 Hb_004097_080 Hb_004097_080 Hb_039562_010--Hb_004097_080 Hb_002173_080 Hb_002173_080 Hb_039562_010--Hb_002173_080 Hb_058620_050 Hb_058620_050 Hb_004693_010--Hb_058620_050 Hb_058620_040 Hb_058620_040 Hb_004693_010--Hb_058620_040 Hb_000712_070 Hb_000712_070 Hb_004693_010--Hb_000712_070 Hb_000141_070 Hb_000141_070 Hb_004693_010--Hb_000141_070 Hb_003334_080 Hb_003334_080 Hb_004693_010--Hb_003334_080 Hb_000059_100--Hb_003090_070 Hb_005614_040 Hb_005614_040 Hb_000059_100--Hb_005614_040 Hb_000059_100--Hb_002805_230 Hb_000059_100--Hb_004693_010 Hb_000059_100--Hb_007532_050 Hb_007532_050--Hb_002805_230 Hb_007532_050--Hb_003090_070 Hb_000076_200 Hb_000076_200 Hb_007532_050--Hb_000076_200 Hb_007527_020 Hb_007527_020 Hb_007532_050--Hb_007527_020 Hb_002805_230--Hb_003090_070 Hb_002805_230--Hb_000712_070 Hb_001134_040 Hb_001134_040 Hb_002805_230--Hb_001134_040 Hb_058620_010 Hb_058620_010 Hb_002805_230--Hb_058620_010 Hb_002805_230--Hb_004693_010 Hb_003090_070--Hb_000712_070 Hb_003090_070--Hb_001134_040 Hb_003090_070--Hb_004693_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0426084 0.0861126 0.267503 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.37105 0.106826

CAGE analysis