Hb_000318_490

Information

Type -
Description -
Location Contig318: 476038-478477
Sequence    

Annotation

kegg
ID tcc:TCM_035188
description Translocase of the outer mitochondrial membrane 6
nr
ID XP_012069348.1
description PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
swissprot
ID Q9XIA7
description Mitochondrial import receptor subunit TOM6 homolog OS=Arabidopsis thaliana GN=TOM6 PE=1 SV=1
trembl
ID A0A067LN22
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10040 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33573: 475990-478468
cDNA
(Sanger)
(ID:Location)		 005_A13.ab1: 475990-478432 , 021_G23.ab1: 476026-478468 , 030_M07.ab1: 476029-478395 , 043_N24.ab1: 476029-478442

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_490 0.0 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
2 Hb_000123_160 0.1036479556 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
3 Hb_001369_400 0.1124417899 - - PREDICTED: uncharacterized protein LOC105648609 [Jatropha curcas]
4 Hb_030565_040 0.1130400979 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
5 Hb_000976_250 0.1152382788 - - -
6 Hb_004333_030 0.115863068 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Jatropha curcas]
7 Hb_001377_380 0.1163890741 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
8 Hb_000300_390 0.1172825734 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
9 Hb_004545_130 0.1197084496 - - uncharacterized protein LOC100305465 [Glycine max]
10 Hb_000103_550 0.1206518796 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
11 Hb_001159_200 0.1226996143 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
12 Hb_000635_080 0.1240942844 - - 60S ribosomal protein L17A [Hevea brasiliensis]
13 Hb_004041_040 0.1247960192 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1 [Camelina sativa]
14 Hb_000819_070 0.1256976706 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
15 Hb_000431_160 0.1258045765 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
16 Hb_004223_260 0.1276416423 - - hypothetical protein F383_09277 [Gossypium arboreum]
17 Hb_000592_060 0.1287792472 - - PREDICTED: ras-related protein RABA6a [Populus euphratica]
18 Hb_000896_120 0.1295263511 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
19 Hb_002876_370 0.1299789803 - - hypothetical protein B456_013G140400 [Gossypium raimondii]
20 Hb_000215_180 0.1309737146 - - hypothetical protein 17 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000318_490 Hb_000318_490 Hb_000123_160 Hb_000123_160 Hb_000318_490--Hb_000123_160 Hb_001369_400 Hb_001369_400 Hb_000318_490--Hb_001369_400 Hb_030565_040 Hb_030565_040 Hb_000318_490--Hb_030565_040 Hb_000976_250 Hb_000976_250 Hb_000318_490--Hb_000976_250 Hb_004333_030 Hb_004333_030 Hb_000318_490--Hb_004333_030 Hb_001377_380 Hb_001377_380 Hb_000318_490--Hb_001377_380 Hb_062135_020 Hb_062135_020 Hb_000123_160--Hb_062135_020 Hb_000123_160--Hb_000976_250 Hb_146225_010 Hb_146225_010 Hb_000123_160--Hb_146225_010 Hb_000236_150 Hb_000236_150 Hb_000123_160--Hb_000236_150 Hb_000001_070 Hb_000001_070 Hb_000123_160--Hb_000001_070 Hb_002876_370 Hb_002876_370 Hb_001369_400--Hb_002876_370 Hb_000819_070 Hb_000819_070 Hb_001369_400--Hb_000819_070 Hb_001159_200 Hb_001159_200 Hb_001369_400--Hb_001159_200 Hb_001369_400--Hb_000976_250 Hb_034585_050 Hb_034585_050 Hb_001369_400--Hb_034585_050 Hb_030565_040--Hb_004333_030 Hb_007520_060 Hb_007520_060 Hb_030565_040--Hb_007520_060 Hb_002320_060 Hb_002320_060 Hb_030565_040--Hb_002320_060 Hb_187083_010 Hb_187083_010 Hb_030565_040--Hb_187083_010 Hb_000236_460 Hb_000236_460 Hb_030565_040--Hb_000236_460 Hb_005914_200 Hb_005914_200 Hb_000976_250--Hb_005914_200 Hb_002518_290 Hb_002518_290 Hb_000976_250--Hb_002518_290 Hb_012539_020 Hb_012539_020 Hb_000976_250--Hb_012539_020 Hb_005474_060 Hb_005474_060 Hb_000976_250--Hb_005474_060 Hb_032969_030 Hb_032969_030 Hb_000976_250--Hb_032969_030 Hb_000300_390 Hb_000300_390 Hb_000976_250--Hb_000300_390 Hb_001623_430 Hb_001623_430 Hb_004333_030--Hb_001623_430 Hb_000896_120 Hb_000896_120 Hb_004333_030--Hb_000896_120 Hb_004333_030--Hb_187083_010 Hb_000106_100 Hb_000106_100 Hb_004333_030--Hb_000106_100 Hb_000780_210 Hb_000780_210 Hb_001377_380--Hb_000780_210 Hb_000635_080 Hb_000635_080 Hb_001377_380--Hb_000635_080 Hb_002316_120 Hb_002316_120 Hb_001377_380--Hb_002316_120 Hb_004545_130 Hb_004545_130 Hb_001377_380--Hb_004545_130 Hb_000789_110 Hb_000789_110 Hb_001377_380--Hb_000789_110 Hb_001377_380--Hb_000300_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.3532 5.76211 14.0939 43.7891 26.7826 70.8371
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
256.528 441.714 221.968 41.3967 17.6801

CAGE analysis