Hb_000318_510

Information

Type -
Description -
Location Contig318: 499828-501303
Sequence    

Annotation

kegg
ID rcu:RCOM_0938630
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012064828.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
swissprot
ID Q9XIM8
description Pentatricopeptide repeat-containing protein At2g15980 OS=Arabidopsis thaliana GN=At2g15980 PE=2 SV=1
trembl
ID A0A067LII9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05526 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_510 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
2 Hb_000283_070 0.066931697 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
3 Hb_001700_040 0.0715323225 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
4 Hb_001143_160 0.0768177177 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
5 Hb_007163_090 0.0778614574 - - PREDICTED: protein spt2-like [Jatropha curcas]
6 Hb_000347_180 0.0779404244 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
7 Hb_004545_140 0.0788910948 - - hypothetical protein JCGZ_23405 [Jatropha curcas]
8 Hb_000244_220 0.0789973929 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
9 Hb_002196_020 0.0801533389 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_123352_020 0.0810660431 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
11 Hb_000107_500 0.0826073644 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
12 Hb_002400_310 0.0833999713 - - hypothetical protein JCGZ_07138 [Jatropha curcas]
13 Hb_001663_030 0.0852590964 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
14 Hb_000270_760 0.0857757356 - - PREDICTED: RNA-dependent RNA polymerase 2 isoform X1 [Jatropha curcas]
15 Hb_000915_050 0.0864771076 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000207_390 0.0882479712 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
17 Hb_000457_260 0.0899682209 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
18 Hb_067345_010 0.0902610932 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
19 Hb_002131_020 0.0905884285 transcription factor TF Family: IWS1 PREDICTED: protein IWS1 homolog [Jatropha curcas]
20 Hb_004602_040 0.0909286028 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000318_510 Hb_000318_510 Hb_000283_070 Hb_000283_070 Hb_000318_510--Hb_000283_070 Hb_001700_040 Hb_001700_040 Hb_000318_510--Hb_001700_040 Hb_001143_160 Hb_001143_160 Hb_000318_510--Hb_001143_160 Hb_007163_090 Hb_007163_090 Hb_000318_510--Hb_007163_090 Hb_000347_180 Hb_000347_180 Hb_000318_510--Hb_000347_180 Hb_004545_140 Hb_004545_140 Hb_000318_510--Hb_004545_140 Hb_000107_500 Hb_000107_500 Hb_000283_070--Hb_000107_500 Hb_000645_120 Hb_000645_120 Hb_000283_070--Hb_000645_120 Hb_006831_110 Hb_006831_110 Hb_000283_070--Hb_006831_110 Hb_002255_050 Hb_002255_050 Hb_000283_070--Hb_002255_050 Hb_003428_070 Hb_003428_070 Hb_000283_070--Hb_003428_070 Hb_001797_050 Hb_001797_050 Hb_000283_070--Hb_001797_050 Hb_000457_260 Hb_000457_260 Hb_001700_040--Hb_000457_260 Hb_001700_040--Hb_000283_070 Hb_000878_010 Hb_000878_010 Hb_001700_040--Hb_000878_010 Hb_005679_050 Hb_005679_050 Hb_001700_040--Hb_005679_050 Hb_000101_240 Hb_000101_240 Hb_001700_040--Hb_000101_240 Hb_123352_020 Hb_123352_020 Hb_001143_160--Hb_123352_020 Hb_000123_210 Hb_000123_210 Hb_001143_160--Hb_000123_210 Hb_001143_160--Hb_007163_090 Hb_000225_040 Hb_000225_040 Hb_001143_160--Hb_000225_040 Hb_001493_030 Hb_001493_030 Hb_001143_160--Hb_001493_030 Hb_000011_200 Hb_000011_200 Hb_001143_160--Hb_000011_200 Hb_001226_030 Hb_001226_030 Hb_007163_090--Hb_001226_030 Hb_001301_200 Hb_001301_200 Hb_007163_090--Hb_001301_200 Hb_000207_390 Hb_000207_390 Hb_007163_090--Hb_000207_390 Hb_000577_010 Hb_000577_010 Hb_007163_090--Hb_000577_010 Hb_007163_090--Hb_123352_020 Hb_007163_090--Hb_001797_050 Hb_000347_180--Hb_000457_260 Hb_001097_050 Hb_001097_050 Hb_000347_180--Hb_001097_050 Hb_000347_180--Hb_123352_020 Hb_002255_030 Hb_002255_030 Hb_000347_180--Hb_002255_030 Hb_004935_030 Hb_004935_030 Hb_000347_180--Hb_004935_030 Hb_001377_270 Hb_001377_270 Hb_000347_180--Hb_001377_270 Hb_000395_190 Hb_000395_190 Hb_004545_140--Hb_000395_190 Hb_004545_140--Hb_000347_180 Hb_000890_210 Hb_000890_210 Hb_004545_140--Hb_000890_210 Hb_001213_050 Hb_001213_050 Hb_004545_140--Hb_001213_050 Hb_002111_070 Hb_002111_070 Hb_004545_140--Hb_002111_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.0866 18.3742 4.38433 14.1142 20.9754 29.7882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2531 11.1381 19.4564 18.7469 8.73868

CAGE analysis