Hb_000319_010

Information

Type -
Description -
Location Contig319: 18550-19026
Sequence    

Annotation

kegg
ID pop:POPTR_0016s03600g
description POPTRDRAFT_825049; hypothetical protein
nr
ID XP_002322621.1
description hypothetical protein POPTR_0016s03600g [Populus trichocarpa]
swissprot
ID O80669
description Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=SIB2 PE=1 SV=1
trembl
ID B9IHR2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s03600g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33653: 18424-19111
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000319_010 0.0 - - hypothetical protein POPTR_0016s03600g [Populus trichocarpa]
2 Hb_004553_040 0.0752945437 - - PREDICTED: protein YLS9-like [Jatropha curcas]
3 Hb_007632_230 0.0774287539 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
4 Hb_004040_010 0.0877428974 - - hypothetical protein POPTR_0019s14250g [Populus trichocarpa]
5 Hb_001277_370 0.0886314911 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
6 Hb_167206_010 0.0894087015 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
7 Hb_002374_030 0.0939292143 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
8 Hb_054926_010 0.0981743861 - - glutamate receptor 2 plant, putative [Ricinus communis]
9 Hb_018563_010 0.1006484908 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
10 Hb_001221_070 0.1023113877 - - PREDICTED: calcium-binding protein CML38-like [Jatropha curcas]
11 Hb_000032_090 0.1053089166 - - conserved hypothetical protein [Ricinus communis]
12 Hb_186995_010 0.1061257556 - - hypothetical protein POPTR_0012s01755g [Populus trichocarpa]
13 Hb_000418_060 0.1090562381 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
14 Hb_189208_060 0.1104116221 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
15 Hb_001254_020 0.1124091778 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
16 Hb_000878_090 0.1131271643 - - sucrose-phosphatase family protein [Populus trichocarpa]
17 Hb_008019_010 0.1134390951 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
18 Hb_011794_050 0.1154849922 - - transcription factor, putative [Ricinus communis]
19 Hb_001160_050 0.1156292514 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
20 Hb_026016_010 0.125730127 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]

Gene co-expression network

sample Hb_000319_010 Hb_000319_010 Hb_004553_040 Hb_004553_040 Hb_000319_010--Hb_004553_040 Hb_007632_230 Hb_007632_230 Hb_000319_010--Hb_007632_230 Hb_004040_010 Hb_004040_010 Hb_000319_010--Hb_004040_010 Hb_001277_370 Hb_001277_370 Hb_000319_010--Hb_001277_370 Hb_167206_010 Hb_167206_010 Hb_000319_010--Hb_167206_010 Hb_002374_030 Hb_002374_030 Hb_000319_010--Hb_002374_030 Hb_004553_040--Hb_167206_010 Hb_004553_040--Hb_001277_370 Hb_001221_070 Hb_001221_070 Hb_004553_040--Hb_001221_070 Hb_004553_040--Hb_007632_230 Hb_018563_010 Hb_018563_010 Hb_004553_040--Hb_018563_010 Hb_007632_230--Hb_001221_070 Hb_007632_230--Hb_001277_370 Hb_054926_010 Hb_054926_010 Hb_007632_230--Hb_054926_010 Hb_007357_010 Hb_007357_010 Hb_007632_230--Hb_007357_010 Hb_008019_010 Hb_008019_010 Hb_004040_010--Hb_008019_010 Hb_004040_010--Hb_054926_010 Hb_018134_010 Hb_018134_010 Hb_004040_010--Hb_018134_010 Hb_011794_050 Hb_011794_050 Hb_004040_010--Hb_011794_050 Hb_000878_090 Hb_000878_090 Hb_004040_010--Hb_000878_090 Hb_001277_370--Hb_001221_070 Hb_001277_370--Hb_167206_010 Hb_001277_370--Hb_007357_010 Hb_186995_010 Hb_186995_010 Hb_167206_010--Hb_186995_010 Hb_167206_010--Hb_018563_010 Hb_012496_020 Hb_012496_020 Hb_167206_010--Hb_012496_020 Hb_001160_050 Hb_001160_050 Hb_002374_030--Hb_001160_050 Hb_189208_060 Hb_189208_060 Hb_002374_030--Hb_189208_060 Hb_008406_070 Hb_008406_070 Hb_002374_030--Hb_008406_070 Hb_000071_090 Hb_000071_090 Hb_002374_030--Hb_000071_090 Hb_000032_090 Hb_000032_090 Hb_002374_030--Hb_000032_090 Hb_000836_420 Hb_000836_420 Hb_002374_030--Hb_000836_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.21912 4.00511 2.91695 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.142894 1.47605

CAGE analysis