Hb_000320_040

Information

Type -
Description -
Location Contig320: 58204-59457
Sequence    

Annotation

kegg
ID rcu:RCOM_0903740
description ATP binding protein, putative (EC:2.7.11.25)
nr
ID XP_002518446.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9FZ36
description Mitogen-activated protein kinase kinase kinase 2 OS=Arabidopsis thaliana GN=ANP2 PE=2 SV=1
trembl
ID B9RXH7
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0903740 PE=4 SV=1
Gene Ontology
ID GO:0005622
description mitogen-activated protein kinase kinase kinase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_040 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_003688_220 0.1140567512 - - unknown [Populus trichocarpa]
3 Hb_001638_120 0.1433580607 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
4 Hb_002085_090 0.1433975583 - - -
5 Hb_007130_020 0.1489254506 - - -
6 Hb_000002_370 0.1492641729 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
7 Hb_001235_160 0.1500166395 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000199_040 0.1509898795 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
9 Hb_004223_080 0.1515852556 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
10 Hb_000836_090 0.1531021127 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
11 Hb_000567_330 0.1536606363 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
12 Hb_008749_010 0.1584329459 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
13 Hb_001769_120 0.1584497312 - - PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]
14 Hb_151103_010 0.1585359016 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002053_180 0.1627144773 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
16 Hb_002463_050 0.1629146005 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001776_130 0.1632431303 - - metallothionein [Hevea brasiliensis]
18 Hb_028487_040 0.163287956 - - hypothetical protein POPTR_0010s11910g [Populus trichocarpa]
19 Hb_000996_040 0.1638105198 - - hypothetical protein POPTR_0003s12500g [Populus trichocarpa]
20 Hb_000069_300 0.164226884 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000320_040 Hb_000320_040 Hb_003688_220 Hb_003688_220 Hb_000320_040--Hb_003688_220 Hb_001638_120 Hb_001638_120 Hb_000320_040--Hb_001638_120 Hb_002085_090 Hb_002085_090 Hb_000320_040--Hb_002085_090 Hb_007130_020 Hb_007130_020 Hb_000320_040--Hb_007130_020 Hb_000002_370 Hb_000002_370 Hb_000320_040--Hb_000002_370 Hb_001235_160 Hb_001235_160 Hb_000320_040--Hb_001235_160 Hb_028487_040 Hb_028487_040 Hb_003688_220--Hb_028487_040 Hb_001776_130 Hb_001776_130 Hb_003688_220--Hb_001776_130 Hb_151103_010 Hb_151103_010 Hb_003688_220--Hb_151103_010 Hb_000134_260 Hb_000134_260 Hb_003688_220--Hb_000134_260 Hb_011918_030 Hb_011918_030 Hb_003688_220--Hb_011918_030 Hb_001638_120--Hb_011918_030 Hb_004223_080 Hb_004223_080 Hb_001638_120--Hb_004223_080 Hb_001025_140 Hb_001025_140 Hb_001638_120--Hb_001025_140 Hb_001638_120--Hb_003688_220 Hb_001638_120--Hb_000134_260 Hb_107078_010 Hb_107078_010 Hb_001638_120--Hb_107078_010 Hb_004855_020 Hb_004855_020 Hb_002085_090--Hb_004855_020 Hb_010868_040 Hb_010868_040 Hb_002085_090--Hb_010868_040 Hb_000926_040 Hb_000926_040 Hb_002085_090--Hb_000926_040 Hb_000227_400 Hb_000227_400 Hb_002085_090--Hb_000227_400 Hb_000009_420 Hb_000009_420 Hb_002085_090--Hb_000009_420 Hb_044653_050 Hb_044653_050 Hb_007130_020--Hb_044653_050 Hb_002311_280 Hb_002311_280 Hb_007130_020--Hb_002311_280 Hb_000836_090 Hb_000836_090 Hb_007130_020--Hb_000836_090 Hb_006922_020 Hb_006922_020 Hb_007130_020--Hb_006922_020 Hb_033006_020 Hb_033006_020 Hb_007130_020--Hb_033006_020 Hb_004228_070 Hb_004228_070 Hb_007130_020--Hb_004228_070 Hb_000199_040 Hb_000199_040 Hb_000002_370--Hb_000199_040 Hb_000103_370 Hb_000103_370 Hb_000002_370--Hb_000103_370 Hb_003777_120 Hb_003777_120 Hb_000002_370--Hb_003777_120 Hb_002053_180 Hb_002053_180 Hb_000002_370--Hb_002053_180 Hb_000002_370--Hb_000836_090 Hb_004567_070 Hb_004567_070 Hb_000002_370--Hb_004567_070 Hb_001386_100 Hb_001386_100 Hb_001235_160--Hb_001386_100 Hb_008250_020 Hb_008250_020 Hb_001235_160--Hb_008250_020 Hb_001235_160--Hb_001776_130 Hb_002095_050 Hb_002095_050 Hb_001235_160--Hb_002095_050 Hb_006153_010 Hb_006153_010 Hb_001235_160--Hb_006153_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0716079 0.409152 1.03106 0.516848 0 0.014814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0384976 0 0 0.121217 0.314119

CAGE analysis