Hb_000320_170

Information

Type -
Description -
Location Contig320: 131033-142262
Sequence    

Annotation

kegg
ID rcu:RCOM_0903810
description hypothetical protein
nr
ID XP_002518453.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O65451
description Probable F-box protein At4g22030 OS=Arabidopsis thaliana GN=At4g22030 PE=4 SV=1
trembl
ID B9RXI4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0903810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002836_030 0.0155754447 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
3 Hb_003582_050 0.0193621877 - - hypothetical protein POPTR_0008s13950g [Populus trichocarpa]
4 Hb_144813_010 0.0325571894 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
5 Hb_011888_010 0.0652076246 - - Receptor like protein 46, putative [Theobroma cacao]
6 Hb_071998_010 0.0691723528 - - PREDICTED: uncharacterized protein LOC105800957 [Gossypium raimondii]
7 Hb_166828_010 0.0752994021 - - -
8 Hb_002092_140 0.0916851602 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
9 Hb_034909_010 0.0972884273 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_003410_020 0.0974048214 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
11 Hb_004566_050 0.1184523912 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_111985_030 0.1188658667 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
13 Hb_001318_060 0.1354067598 - - contains similarity to reverse transcriptase-like proteins [Arabidopsis thaliana]
14 Hb_000300_240 0.1364793269 - - Sodium/potassium/calcium exchanger 6 precursor, putative [Ricinus communis]
15 Hb_010435_010 0.1439870587 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_000002_280 0.1524260618 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
17 Hb_004191_030 0.1717195137 - - hypothetical protein POPTR_0013s13140g [Populus trichocarpa]
18 Hb_080873_010 0.1803121412 - - -
19 Hb_000417_330 0.1881550056 - - -
20 Hb_008576_010 0.1943372949 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000320_170 Hb_000320_170 Hb_002836_030 Hb_002836_030 Hb_000320_170--Hb_002836_030 Hb_003582_050 Hb_003582_050 Hb_000320_170--Hb_003582_050 Hb_144813_010 Hb_144813_010 Hb_000320_170--Hb_144813_010 Hb_011888_010 Hb_011888_010 Hb_000320_170--Hb_011888_010 Hb_071998_010 Hb_071998_010 Hb_000320_170--Hb_071998_010 Hb_166828_010 Hb_166828_010 Hb_000320_170--Hb_166828_010 Hb_002836_030--Hb_003582_050 Hb_002836_030--Hb_144813_010 Hb_002836_030--Hb_011888_010 Hb_002836_030--Hb_071998_010 Hb_034909_010 Hb_034909_010 Hb_002836_030--Hb_034909_010 Hb_003582_050--Hb_144813_010 Hb_003582_050--Hb_011888_010 Hb_003582_050--Hb_071998_010 Hb_003582_050--Hb_034909_010 Hb_144813_010--Hb_011888_010 Hb_144813_010--Hb_071998_010 Hb_144813_010--Hb_034909_010 Hb_011888_010--Hb_071998_010 Hb_011888_010--Hb_034909_010 Hb_003410_020 Hb_003410_020 Hb_011888_010--Hb_003410_020 Hb_071998_010--Hb_034909_010 Hb_071998_010--Hb_003410_020 Hb_004566_050 Hb_004566_050 Hb_071998_010--Hb_004566_050 Hb_002092_140 Hb_002092_140 Hb_166828_010--Hb_002092_140 Hb_166828_010--Hb_002836_030 Hb_166828_010--Hb_003582_050 Hb_080873_010 Hb_080873_010 Hb_166828_010--Hb_080873_010 Hb_166828_010--Hb_144813_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0621612 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0456009

CAGE analysis