Hb_000320_180

Information

Type -
Description -
Location Contig320: 146362-149396
Sequence    

Annotation

kegg
ID rcu:RCOM_0903850
description hypothetical protein
nr
ID XP_012091322.1
description PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JDC5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21199 PE=4 SV=1
Gene Ontology
ID GO:0015996
description protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_180 0.0 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
2 Hb_138585_050 0.0931009541 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
3 Hb_004459_040 0.0976340211 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
4 Hb_024714_050 0.0980531867 - - hypothetical protein CICLE_v100188992mg, partial [Citrus clementina]
5 Hb_000042_200 0.0991159823 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
6 Hb_002687_170 0.1059809768 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
7 Hb_004846_090 0.1059824244 transcription factor TF Family: HMG HMG-box DNA-binding family protein isoform 1 [Theobroma cacao]
8 Hb_002843_140 0.1071250063 - - hypothetical protein JCGZ_20933 [Jatropha curcas]
9 Hb_001953_090 0.1075332104 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3 [Jatropha curcas]
10 Hb_002918_290 0.1133857633 - - PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]
11 Hb_029584_060 0.1137124777 - - Grave disease carrier protein, putative [Ricinus communis]
12 Hb_000366_110 0.1150235181 - - PREDICTED: signal peptidase complex catalytic subunit SEC11A-like [Jatropha curcas]
13 Hb_002431_050 0.1156710762 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
14 Hb_003349_080 0.1159682785 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
15 Hb_033153_060 0.1172549644 - - Transcription elongation factor, putative [Ricinus communis]
16 Hb_000210_220 0.118148171 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
17 Hb_000680_140 0.1191648775 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
18 Hb_004871_040 0.1200900777 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase [Jatropha curcas]
19 Hb_000840_180 0.1202182954 - - protein BOLA2 [Jatropha curcas]
20 Hb_007416_020 0.1210641572 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]

Gene co-expression network

sample Hb_000320_180 Hb_000320_180 Hb_138585_050 Hb_138585_050 Hb_000320_180--Hb_138585_050 Hb_004459_040 Hb_004459_040 Hb_000320_180--Hb_004459_040 Hb_024714_050 Hb_024714_050 Hb_000320_180--Hb_024714_050 Hb_000042_200 Hb_000042_200 Hb_000320_180--Hb_000042_200 Hb_002687_170 Hb_002687_170 Hb_000320_180--Hb_002687_170 Hb_004846_090 Hb_004846_090 Hb_000320_180--Hb_004846_090 Hb_001491_010 Hb_001491_010 Hb_138585_050--Hb_001491_010 Hb_008554_070 Hb_008554_070 Hb_138585_050--Hb_008554_070 Hb_000210_220 Hb_000210_220 Hb_138585_050--Hb_000210_220 Hb_024714_010 Hb_024714_010 Hb_138585_050--Hb_024714_010 Hb_004871_040 Hb_004871_040 Hb_138585_050--Hb_004871_040 Hb_033153_060 Hb_033153_060 Hb_004459_040--Hb_033153_060 Hb_007576_170 Hb_007576_170 Hb_004459_040--Hb_007576_170 Hb_000680_140 Hb_000680_140 Hb_004459_040--Hb_000680_140 Hb_006541_010 Hb_006541_010 Hb_004459_040--Hb_006541_010 Hb_004459_040--Hb_002687_170 Hb_000224_140 Hb_000224_140 Hb_004459_040--Hb_000224_140 Hb_024714_050--Hb_004846_090 Hb_003349_080 Hb_003349_080 Hb_024714_050--Hb_003349_080 Hb_000318_160 Hb_000318_160 Hb_024714_050--Hb_000318_160 Hb_003336_030 Hb_003336_030 Hb_024714_050--Hb_003336_030 Hb_003050_280 Hb_003050_280 Hb_024714_050--Hb_003050_280 Hb_000042_200--Hb_033153_060 Hb_002918_290 Hb_002918_290 Hb_000042_200--Hb_002918_290 Hb_001953_090 Hb_001953_090 Hb_000042_200--Hb_001953_090 Hb_005463_140 Hb_005463_140 Hb_000042_200--Hb_005463_140 Hb_001284_030 Hb_001284_030 Hb_000042_200--Hb_001284_030 Hb_000042_200--Hb_004459_040 Hb_001158_230 Hb_001158_230 Hb_002687_170--Hb_001158_230 Hb_005181_030 Hb_005181_030 Hb_002687_170--Hb_005181_030 Hb_005474_060 Hb_005474_060 Hb_002687_170--Hb_005474_060 Hb_009421_040 Hb_009421_040 Hb_002687_170--Hb_009421_040 Hb_003994_040 Hb_003994_040 Hb_002687_170--Hb_003994_040 Hb_000453_090 Hb_000453_090 Hb_004846_090--Hb_000453_090 Hb_011671_390 Hb_011671_390 Hb_004846_090--Hb_011671_390 Hb_004846_090--Hb_004459_040 Hb_001780_040 Hb_001780_040 Hb_004846_090--Hb_001780_040 Hb_000840_180 Hb_000840_180 Hb_004846_090--Hb_000840_180 Hb_028486_030 Hb_028486_030 Hb_004846_090--Hb_028486_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.37089 0.809787 3.06742 4.68021 4.15762 4.69138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5648 17.4875 7.9216 1.68828 7.05348

CAGE analysis