Hb_000320_240

Information

Type -
Description -
Location Contig320: 183226-187537
Sequence    

Annotation

kegg
ID rcu:RCOM_0903900
description multicopper oxidase, putative (EC:1.10.3.3)
nr
ID XP_002518462.1
description multicopper oxidase, putative [Ricinus communis]
swissprot
ID Q00624
description L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1
trembl
ID B9RXJ3
description Multicopper oxidase, putative OS=Ricinus communis GN=RCOM_0903900 PE=4 SV=1
Gene Ontology
ID GO:0009505
description l-ascorbate oxidase homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33795: 182973-187514
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_240 0.0 - - multicopper oxidase, putative [Ricinus communis]
2 Hb_110631_010 0.0697518224 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
3 Hb_007138_010 0.0954068687 - - PREDICTED: putative laccase-9 [Jatropha curcas]
4 Hb_165110_010 0.0991083975 - - PREDICTED: kunitz-type elastase inhibitor BrEI-like [Jatropha curcas]
5 Hb_000086_510 0.101737373 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
6 Hb_073870_010 0.1018423857 - - hypothetical protein RCOM_0725510 [Ricinus communis]
7 Hb_100953_010 0.1019976855 - - hypothetical protein JCGZ_10310 [Jatropha curcas]
8 Hb_001404_060 0.1050721186 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_001369_510 0.109662595 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
10 Hb_163989_010 0.1098092105 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005389_030 0.1104751842 - - hypothetical protein VITISV_023348 [Vitis vinifera]
12 Hb_002641_090 0.1124417357 - - PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]
13 Hb_006103_050 0.1135957482 - - -
14 Hb_005357_040 0.1173644916 - - gibberellin 20-oxidase, putative [Ricinus communis]
15 Hb_138585_070 0.1271847186 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000028_450 0.1276716037 - - PREDICTED: monoglyceride lipase-like [Jatropha curcas]
17 Hb_000506_050 0.1279910782 - - PREDICTED: thymidine kinase [Jatropha curcas]
18 Hb_000157_020 0.1285503851 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000935_060 0.1307154164 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Jatropha curcas]
20 Hb_000617_160 0.1318210029 - - -

Gene co-expression network

sample Hb_000320_240 Hb_000320_240 Hb_110631_010 Hb_110631_010 Hb_000320_240--Hb_110631_010 Hb_007138_010 Hb_007138_010 Hb_000320_240--Hb_007138_010 Hb_165110_010 Hb_165110_010 Hb_000320_240--Hb_165110_010 Hb_000086_510 Hb_000086_510 Hb_000320_240--Hb_000086_510 Hb_073870_010 Hb_073870_010 Hb_000320_240--Hb_073870_010 Hb_100953_010 Hb_100953_010 Hb_000320_240--Hb_100953_010 Hb_000506_050 Hb_000506_050 Hb_110631_010--Hb_000506_050 Hb_110631_010--Hb_000086_510 Hb_001863_520 Hb_001863_520 Hb_110631_010--Hb_001863_520 Hb_001404_060 Hb_001404_060 Hb_110631_010--Hb_001404_060 Hb_110631_010--Hb_165110_010 Hb_007138_010--Hb_100953_010 Hb_001369_510 Hb_001369_510 Hb_007138_010--Hb_001369_510 Hb_005389_030 Hb_005389_030 Hb_007138_010--Hb_005389_030 Hb_007138_010--Hb_073870_010 Hb_007138_010--Hb_001404_060 Hb_005357_040 Hb_005357_040 Hb_007138_010--Hb_005357_040 Hb_001052_020 Hb_001052_020 Hb_165110_010--Hb_001052_020 Hb_000062_280 Hb_000062_280 Hb_165110_010--Hb_000062_280 Hb_165110_010--Hb_000506_050 Hb_165110_010--Hb_000086_510 Hb_000157_020 Hb_000157_020 Hb_165110_010--Hb_000157_020 Hb_085829_010 Hb_085829_010 Hb_000086_510--Hb_085829_010 Hb_000334_090 Hb_000334_090 Hb_000086_510--Hb_000334_090 Hb_000086_510--Hb_000157_020 Hb_000243_340 Hb_000243_340 Hb_000086_510--Hb_000243_340 Hb_073870_010--Hb_001404_060 Hb_006103_050 Hb_006103_050 Hb_073870_010--Hb_006103_050 Hb_073870_010--Hb_100953_010 Hb_000935_060 Hb_000935_060 Hb_073870_010--Hb_000935_060 Hb_073870_010--Hb_001369_510 Hb_100953_010--Hb_001369_510 Hb_100953_010--Hb_005389_030 Hb_100953_010--Hb_005357_040 Hb_000028_450 Hb_000028_450 Hb_100953_010--Hb_000028_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0895956 2.36546 9.02367 0.0103531 0.0107641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.70995 0.125073

CAGE analysis