Hb_000320_250

Information

Type -
Description -
Location Contig320: 188724-192605
Sequence    

Annotation

kegg
ID pop:POPTR_0021s00440g
description hypothetical protein
nr
ID XP_006389593.1
description hypothetical protein POPTR_0021s00440g [Populus trichocarpa]
swissprot
ID Q8RJP2
description Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=1
trembl
ID U7E1P5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0021s00440g PE=4 SV=1
Gene Ontology
ID GO:0003824
description probable rhamnogalacturonate lyase b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33797: 191256-192159
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_250 0.0 - - hypothetical protein POPTR_0021s00440g [Populus trichocarpa]
2 Hb_003252_030 0.1336183119 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
3 Hb_001104_290 0.1337735058 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Theobroma cacao]
4 Hb_000363_100 0.1351557997 - - -
5 Hb_002874_100 0.1380081984 - - cytochrome P450, putative [Ricinus communis]
6 Hb_007472_060 0.1393847129 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
7 Hb_177587_010 0.1484940434 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
8 Hb_012753_140 0.1488638388 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
9 Hb_001053_100 0.1496745112 - - DNA-damage-inducible protein f, putative [Ricinus communis]
10 Hb_007477_020 0.1497794679 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
11 Hb_033153_030 0.1505000543 - - PREDICTED: uncharacterized protein LOC105650145 [Jatropha curcas]
12 Hb_002820_100 0.1509792833 - - hypothetical protein OsI_33031 [Oryza sativa Indica Group]
13 Hb_001013_070 0.1520644775 - - -
14 Hb_103931_010 0.1522577721 - - -
15 Hb_000027_010 0.1522874507 - - -
16 Hb_137821_010 0.1523709568 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]
17 Hb_011689_090 0.1545020837 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
18 Hb_015085_010 0.1549670317 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
19 Hb_000086_160 0.1553337704 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
20 Hb_005373_030 0.1561691442 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000320_250 Hb_000320_250 Hb_003252_030 Hb_003252_030 Hb_000320_250--Hb_003252_030 Hb_001104_290 Hb_001104_290 Hb_000320_250--Hb_001104_290 Hb_000363_100 Hb_000363_100 Hb_000320_250--Hb_000363_100 Hb_002874_100 Hb_002874_100 Hb_000320_250--Hb_002874_100 Hb_007472_060 Hb_007472_060 Hb_000320_250--Hb_007472_060 Hb_177587_010 Hb_177587_010 Hb_000320_250--Hb_177587_010 Hb_003252_030--Hb_001104_290 Hb_003252_030--Hb_000363_100 Hb_003252_030--Hb_002874_100 Hb_011689_090 Hb_011689_090 Hb_003252_030--Hb_011689_090 Hb_003747_080 Hb_003747_080 Hb_003252_030--Hb_003747_080 Hb_000203_110 Hb_000203_110 Hb_003252_030--Hb_000203_110 Hb_001104_290--Hb_000363_100 Hb_001104_290--Hb_002874_100 Hb_001104_290--Hb_011689_090 Hb_001104_290--Hb_003747_080 Hb_116679_010 Hb_116679_010 Hb_001104_290--Hb_116679_010 Hb_000363_100--Hb_002874_100 Hb_000363_100--Hb_011689_090 Hb_000445_480 Hb_000445_480 Hb_000363_100--Hb_000445_480 Hb_000363_100--Hb_116679_010 Hb_033153_030 Hb_033153_030 Hb_002874_100--Hb_033153_030 Hb_007426_100 Hb_007426_100 Hb_002874_100--Hb_007426_100 Hb_002874_100--Hb_000445_480 Hb_000527_090 Hb_000527_090 Hb_007472_060--Hb_000527_090 Hb_007472_060--Hb_011689_090 Hb_029508_050 Hb_029508_050 Hb_007472_060--Hb_029508_050 Hb_007472_060--Hb_116679_010 Hb_006452_080 Hb_006452_080 Hb_007472_060--Hb_006452_080 Hb_003607_040 Hb_003607_040 Hb_007472_060--Hb_003607_040 Hb_000334_040 Hb_000334_040 Hb_177587_010--Hb_000334_040 Hb_050229_030 Hb_050229_030 Hb_177587_010--Hb_050229_030 Hb_009466_040 Hb_009466_040 Hb_177587_010--Hb_009466_040 Hb_001013_070 Hb_001013_070 Hb_177587_010--Hb_001013_070 Hb_000327_050 Hb_000327_050 Hb_177587_010--Hb_000327_050 Hb_002304_120 Hb_002304_120 Hb_177587_010--Hb_002304_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0210683 0.102712 0.00824361 1.14273 0 0.00922178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0300038 0

CAGE analysis