Hb_000320_270

Information

Type -
Description -
Location Contig320: 202348-205312
Sequence    

Annotation

kegg
ID rcu:RCOM_0904170
description 5'-adenylylsulfate reductase 1, chloroplast precursor, putative (EC:1.8.4.9)
nr
ID XP_012091329.1
description PREDICTED: 5'-adenylylsulfate reductase 1, chloroplastic [Jatropha curcas]
swissprot
ID P92980
description 5'-adenylylsulfate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=APR3 PE=2 SV=2
trembl
ID A0A067JAD3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21207 PE=4 SV=1
Gene Ontology
ID GO:0005623
description 5 -adenylylsulfate reductase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33803: 202336-205311
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_270 0.0 - - PREDICTED: 5'-adenylylsulfate reductase 1, chloroplastic [Jatropha curcas]
2 Hb_001948_090 0.0982374326 transcription factor TF Family: GRAS hypothetical protein POPTR_0005s14540g [Populus trichocarpa]
3 Hb_005408_100 0.1077592873 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
4 Hb_000230_470 0.1079890896 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
5 Hb_001102_200 0.1079957324 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
6 Hb_003912_080 0.1229548105 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
7 Hb_012308_050 0.1285476452 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
8 Hb_000836_210 0.1295116223 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
9 Hb_000654_050 0.1308489926 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
10 Hb_001675_310 0.1328266905 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
11 Hb_001141_060 0.1334775204 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
12 Hb_000753_120 0.1337033113 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
13 Hb_002909_100 0.1343402445 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
14 Hb_009745_010 0.1370609493 - - cellulose synthase-like protein [Populus tomentosa]
15 Hb_002686_210 0.1389889658 - - zinc finger protein, putative [Ricinus communis]
16 Hb_005725_280 0.1390429416 - - PREDICTED: sodium-coupled neutral amino acid transporter 5-like [Jatropha curcas]
17 Hb_006911_020 0.1409881983 - - CC-NBS-LRR protein isoform 1 [Theobroma cacao]
18 Hb_003929_230 0.1433013418 - - PREDICTED: S-adenosylmethionine synthase 5 [Nelumbo nucifera]
19 Hb_000329_790 0.1448636036 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
20 Hb_004678_010 0.1488135771 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000320_270 Hb_000320_270 Hb_001948_090 Hb_001948_090 Hb_000320_270--Hb_001948_090 Hb_005408_100 Hb_005408_100 Hb_000320_270--Hb_005408_100 Hb_000230_470 Hb_000230_470 Hb_000320_270--Hb_000230_470 Hb_001102_200 Hb_001102_200 Hb_000320_270--Hb_001102_200 Hb_003912_080 Hb_003912_080 Hb_000320_270--Hb_003912_080 Hb_012308_050 Hb_012308_050 Hb_000320_270--Hb_012308_050 Hb_001141_060 Hb_001141_060 Hb_001948_090--Hb_001141_060 Hb_001948_090--Hb_003912_080 Hb_001948_090--Hb_000230_470 Hb_001948_090--Hb_005408_100 Hb_000753_120 Hb_000753_120 Hb_001948_090--Hb_000753_120 Hb_005408_100--Hb_000230_470 Hb_000109_190 Hb_000109_190 Hb_005408_100--Hb_000109_190 Hb_002909_100 Hb_002909_100 Hb_005408_100--Hb_002909_100 Hb_002740_100 Hb_002740_100 Hb_005408_100--Hb_002740_100 Hb_005408_100--Hb_000753_120 Hb_000230_470--Hb_002909_100 Hb_000230_470--Hb_000753_120 Hb_000230_470--Hb_003912_080 Hb_002686_210 Hb_002686_210 Hb_000230_470--Hb_002686_210 Hb_000110_260 Hb_000110_260 Hb_001102_200--Hb_000110_260 Hb_000329_790 Hb_000329_790 Hb_001102_200--Hb_000329_790 Hb_005064_070 Hb_005064_070 Hb_001102_200--Hb_005064_070 Hb_005725_280 Hb_005725_280 Hb_001102_200--Hb_005725_280 Hb_089305_010 Hb_089305_010 Hb_001102_200--Hb_089305_010 Hb_003912_080--Hb_002909_100 Hb_001999_320 Hb_001999_320 Hb_003912_080--Hb_001999_320 Hb_004678_010 Hb_004678_010 Hb_003912_080--Hb_004678_010 Hb_002026_030 Hb_002026_030 Hb_003912_080--Hb_002026_030 Hb_007483_120 Hb_007483_120 Hb_012308_050--Hb_007483_120 Hb_002510_100 Hb_002510_100 Hb_012308_050--Hb_002510_100 Hb_000654_050 Hb_000654_050 Hb_012308_050--Hb_000654_050 Hb_002849_180 Hb_002849_180 Hb_012308_050--Hb_002849_180 Hb_005724_040 Hb_005724_040 Hb_012308_050--Hb_005724_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6935 129.746 88.6092 137.607 4.93627 13.2155
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.09042 2.57761 5.57609 26.1465 77.5396

CAGE analysis