Hb_000320_340

Information

Type -
Description -
Location Contig320: 246925-249450
Sequence    

Annotation

kegg
ID rcu:RCOM_0904320
description Beta-1,3-galactosyltransferase sqv-2, putative (EC:2.4.1.134)
nr
ID XP_002518474.1
description Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
swissprot
ID A8MRC7
description Probable beta-1,3-galactosyltransferase 2 OS=Arabidopsis thaliana GN=B3GALT2 PE=2 SV=1
trembl
ID B9RXK5
description Beta-1,3-galactosyltransferase sqv-2, putative OS=Ricinus communis GN=RCOM_0904320 PE=4 SV=1
Gene Ontology
ID GO:0005794
description probable beta- -galactosyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33819: 246594-268888 , PASA_asmbl_33821: 247456-268888
cDNA
(Sanger)
(ID:Location)		 040_G03.ab1: 246594-247161

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_340 0.0 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
2 Hb_000399_060 0.0784055577 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
3 Hb_000189_480 0.093579814 - - PREDICTED: uncharacterized protein LOC105111904 isoform X2 [Populus euphratica]
4 Hb_008406_180 0.104284439 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
5 Hb_001157_230 0.1070511662 - - Protein AFR, putative [Ricinus communis]
6 Hb_000860_060 0.1085628233 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
7 Hb_014361_060 0.1141664532 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]
8 Hb_001951_150 0.1198129258 - - PREDICTED: uncharacterized protein LOC105649758 [Jatropha curcas]
9 Hb_000300_090 0.1212124681 - - catalytic, putative [Ricinus communis]
10 Hb_003058_100 0.1219230878 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
11 Hb_000008_340 0.1243090001 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
12 Hb_000140_340 0.1244084444 - - PREDICTED: protein ABIL1 [Jatropha curcas]
13 Hb_011926_040 0.1256420672 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
14 Hb_000212_120 0.1273312944 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
15 Hb_001504_030 0.1273399176 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
16 Hb_048093_010 0.1289194495 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
17 Hb_000014_040 0.1290993824 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001876_040 0.1294888168 - - PREDICTED: mucin-5B [Jatropha curcas]
19 Hb_000390_190 0.1305088336 - - ATP binding protein, putative [Ricinus communis]
20 Hb_000007_060 0.1316669252 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000320_340 Hb_000320_340 Hb_000399_060 Hb_000399_060 Hb_000320_340--Hb_000399_060 Hb_000189_480 Hb_000189_480 Hb_000320_340--Hb_000189_480 Hb_008406_180 Hb_008406_180 Hb_000320_340--Hb_008406_180 Hb_001157_230 Hb_001157_230 Hb_000320_340--Hb_001157_230 Hb_000860_060 Hb_000860_060 Hb_000320_340--Hb_000860_060 Hb_014361_060 Hb_014361_060 Hb_000320_340--Hb_014361_060 Hb_011926_040 Hb_011926_040 Hb_000399_060--Hb_011926_040 Hb_000014_040 Hb_000014_040 Hb_000399_060--Hb_000014_040 Hb_000665_180 Hb_000665_180 Hb_000399_060--Hb_000665_180 Hb_000399_060--Hb_001157_230 Hb_000399_060--Hb_008406_180 Hb_001504_030 Hb_001504_030 Hb_000189_480--Hb_001504_030 Hb_113818_010 Hb_113818_010 Hb_000189_480--Hb_113818_010 Hb_000140_340 Hb_000140_340 Hb_000189_480--Hb_000140_340 Hb_000189_480--Hb_001157_230 Hb_007477_050 Hb_007477_050 Hb_000189_480--Hb_007477_050 Hb_000049_020 Hb_000049_020 Hb_008406_180--Hb_000049_020 Hb_000890_230 Hb_000890_230 Hb_008406_180--Hb_000890_230 Hb_002400_320 Hb_002400_320 Hb_008406_180--Hb_002400_320 Hb_008406_180--Hb_001157_230 Hb_000056_130 Hb_000056_130 Hb_008406_180--Hb_000056_130 Hb_002226_080 Hb_002226_080 Hb_008406_180--Hb_002226_080 Hb_001876_040 Hb_001876_040 Hb_001157_230--Hb_001876_040 Hb_000212_120 Hb_000212_120 Hb_001157_230--Hb_000212_120 Hb_022250_010 Hb_022250_010 Hb_001157_230--Hb_022250_010 Hb_032202_220 Hb_032202_220 Hb_001157_230--Hb_032202_220 Hb_024184_010 Hb_024184_010 Hb_001157_230--Hb_024184_010 Hb_001029_040 Hb_001029_040 Hb_001157_230--Hb_001029_040 Hb_002955_020 Hb_002955_020 Hb_000860_060--Hb_002955_020 Hb_000920_310 Hb_000920_310 Hb_000860_060--Hb_000920_310 Hb_000008_340 Hb_000008_340 Hb_000860_060--Hb_000008_340 Hb_000342_170 Hb_000342_170 Hb_000860_060--Hb_000342_170 Hb_000390_190 Hb_000390_190 Hb_000860_060--Hb_000390_190 Hb_000256_230 Hb_000256_230 Hb_014361_060--Hb_000256_230 Hb_000418_020 Hb_000418_020 Hb_014361_060--Hb_000418_020 Hb_000903_010 Hb_000903_010 Hb_014361_060--Hb_000903_010 Hb_000665_170 Hb_000665_170 Hb_014361_060--Hb_000665_170 Hb_000389_030 Hb_000389_030 Hb_014361_060--Hb_000389_030 Hb_000300_090 Hb_000300_090 Hb_014361_060--Hb_000300_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.15192 2.72773 8.18848 15.2886 4.05202 3.41174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.95958 2.41427 3.10592 5.04424 13.317

CAGE analysis