Hb_000320_350

Information

Type -
Description -
Location Contig320: 273760-274341
Sequence    

Annotation

kegg
ID rcu:RCOM_0904330
description hypothetical protein
nr
ID XP_002518475.1
description hypothetical protein RCOM_0904330 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RXK6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0904330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33824: 273453-274876 , PASA_asmbl_33825: 275088-275516
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_350 0.0 - - hypothetical protein RCOM_0904330 [Ricinus communis]
2 Hb_000603_020 0.1099572835 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
3 Hb_004449_250 0.1194832469 - - PREDICTED: protein EI24 homolog [Jatropha curcas]
4 Hb_011360_110 0.122929726 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
5 Hb_003001_130 0.1257581114 - - conserved hypothetical protein [Ricinus communis]
6 Hb_028639_030 0.1284706191 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
7 Hb_000928_120 0.136816338 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
8 Hb_005489_150 0.1422839934 - - hypothetical protein JCGZ_20759 [Jatropha curcas]
9 Hb_004522_030 0.1480454203 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
10 Hb_001105_130 0.1501709294 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
11 Hb_001250_080 0.1509251636 - - PREDICTED: F-box/kelch-repeat protein At1g23390 [Jatropha curcas]
12 Hb_000283_140 0.1513502755 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
13 Hb_003462_080 0.1521150842 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
14 Hb_000684_310 0.152739203 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
15 Hb_004317_010 0.152802998 - - hypothetical protein CICLE_v10011038mg [Citrus clementina]
16 Hb_003470_110 0.1552867552 - - unnamed protein product [Vitis vinifera]
17 Hb_001195_090 0.1556744732 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
18 Hb_000570_020 0.1564129706 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
19 Hb_002289_150 0.1570327267 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
20 Hb_000271_220 0.1582751722 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000320_350 Hb_000320_350 Hb_000603_020 Hb_000603_020 Hb_000320_350--Hb_000603_020 Hb_004449_250 Hb_004449_250 Hb_000320_350--Hb_004449_250 Hb_011360_110 Hb_011360_110 Hb_000320_350--Hb_011360_110 Hb_003001_130 Hb_003001_130 Hb_000320_350--Hb_003001_130 Hb_028639_030 Hb_028639_030 Hb_000320_350--Hb_028639_030 Hb_000928_120 Hb_000928_120 Hb_000320_350--Hb_000928_120 Hb_000271_220 Hb_000271_220 Hb_000603_020--Hb_000271_220 Hb_000603_020--Hb_003001_130 Hb_012807_150 Hb_012807_150 Hb_000603_020--Hb_012807_150 Hb_000283_140 Hb_000283_140 Hb_000603_020--Hb_000283_140 Hb_000424_030 Hb_000424_030 Hb_000603_020--Hb_000424_030 Hb_004449_250--Hb_011360_110 Hb_012707_040 Hb_012707_040 Hb_004449_250--Hb_012707_040 Hb_003006_080 Hb_003006_080 Hb_004449_250--Hb_003006_080 Hb_000258_050 Hb_000258_050 Hb_004449_250--Hb_000258_050 Hb_007537_030 Hb_007537_030 Hb_004449_250--Hb_007537_030 Hb_001474_020 Hb_001474_020 Hb_011360_110--Hb_001474_020 Hb_011360_110--Hb_028639_030 Hb_132840_160 Hb_132840_160 Hb_011360_110--Hb_132840_160 Hb_005489_150 Hb_005489_150 Hb_011360_110--Hb_005489_150 Hb_003001_130--Hb_000928_120 Hb_003001_130--Hb_000283_140 Hb_004241_110 Hb_004241_110 Hb_003001_130--Hb_004241_110 Hb_000227_280 Hb_000227_280 Hb_003001_130--Hb_000227_280 Hb_003001_130--Hb_000271_220 Hb_001216_110 Hb_001216_110 Hb_028639_030--Hb_001216_110 Hb_000570_020 Hb_000570_020 Hb_028639_030--Hb_000570_020 Hb_021576_070 Hb_021576_070 Hb_028639_030--Hb_021576_070 Hb_000679_040 Hb_000679_040 Hb_028639_030--Hb_000679_040 Hb_001195_090 Hb_001195_090 Hb_028639_030--Hb_001195_090 Hb_004522_030 Hb_004522_030 Hb_000928_120--Hb_004522_030 Hb_000928_120--Hb_000283_140 Hb_000622_330 Hb_000622_330 Hb_000928_120--Hb_000622_330 Hb_000928_120--Hb_000570_020 Hb_000928_120--Hb_007537_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.652526 2.16145 1.71526 6.74896 0.0427169 0.760626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.317077 0.830597 0.578396 1.43332 3.51858

CAGE analysis