Hb_000320_440

Information

Type -
Description -
Location Contig320: 330074-345439
Sequence    

Annotation

kegg
ID rcu:RCOM_0904600
description signal transducer, putative
nr
ID XP_012091345.1
description PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
swissprot
ID Q8W4K1
description tRNA wybutosine-synthesizing protein 2/3/4 OS=Arabidopsis thaliana GN=At4g04670 PE=2 SV=1
trembl
ID A0A067JDE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21219 PE=4 SV=1
Gene Ontology
ID GO:0016740
description trna wybutosine-synthesizing protein 2 3 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33836: 330502-330964 , PASA_asmbl_33837: 332172-332677 , PASA_asmbl_33838: 332868-333611 , PASA_asmbl_33839: 333721-344828 , PASA_asmbl_33840: 333721-344327
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_440 0.0 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
2 Hb_001776_080 0.0635049556 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
3 Hb_000088_180 0.0720448045 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
4 Hb_000172_530 0.0727706639 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]
5 Hb_000260_700 0.0749515473 - - PREDICTED: cytochrome P450 89A2-like [Jatropha curcas]
6 Hb_009615_110 0.0751110054 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
7 Hb_003777_220 0.0755052849 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 41 isoform X1 [Jatropha curcas]
8 Hb_006478_070 0.0784570928 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
9 Hb_012807_120 0.0785677211 - - metal ion binding protein, putative [Ricinus communis]
10 Hb_160818_010 0.0790527833 - - -
11 Hb_005016_030 0.084454635 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
12 Hb_006173_020 0.0852508526 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
13 Hb_000176_140 0.0861318393 - - PREDICTED: bystin [Jatropha curcas]
14 Hb_000270_450 0.0867705318 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
15 Hb_001140_080 0.0884073406 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
16 Hb_113216_010 0.0924739738 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
17 Hb_002149_040 0.0925982488 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001846_080 0.0927451501 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
19 Hb_012654_020 0.0931534143 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000573_040 0.0961127424 - - hypothetical protein JCGZ_19524 [Jatropha curcas]

Gene co-expression network

sample Hb_000320_440 Hb_000320_440 Hb_001776_080 Hb_001776_080 Hb_000320_440--Hb_001776_080 Hb_000088_180 Hb_000088_180 Hb_000320_440--Hb_000088_180 Hb_000172_530 Hb_000172_530 Hb_000320_440--Hb_000172_530 Hb_000260_700 Hb_000260_700 Hb_000320_440--Hb_000260_700 Hb_009615_110 Hb_009615_110 Hb_000320_440--Hb_009615_110 Hb_003777_220 Hb_003777_220 Hb_000320_440--Hb_003777_220 Hb_000176_140 Hb_000176_140 Hb_001776_080--Hb_000176_140 Hb_160818_010 Hb_160818_010 Hb_001776_080--Hb_160818_010 Hb_002149_040 Hb_002149_040 Hb_001776_080--Hb_002149_040 Hb_000179_250 Hb_000179_250 Hb_001776_080--Hb_000179_250 Hb_011316_030 Hb_011316_030 Hb_001776_080--Hb_011316_030 Hb_004032_460 Hb_004032_460 Hb_000088_180--Hb_004032_460 Hb_000088_180--Hb_000260_700 Hb_000365_350 Hb_000365_350 Hb_000088_180--Hb_000365_350 Hb_000088_180--Hb_001776_080 Hb_000173_370 Hb_000173_370 Hb_000088_180--Hb_000173_370 Hb_001523_010 Hb_001523_010 Hb_000172_530--Hb_001523_010 Hb_001846_080 Hb_001846_080 Hb_000172_530--Hb_001846_080 Hb_006478_070 Hb_006478_070 Hb_000172_530--Hb_006478_070 Hb_000466_060 Hb_000466_060 Hb_000172_530--Hb_000466_060 Hb_005016_030 Hb_005016_030 Hb_000172_530--Hb_005016_030 Hb_000260_700--Hb_000172_530 Hb_000260_700--Hb_001776_080 Hb_012654_020 Hb_012654_020 Hb_000260_700--Hb_012654_020 Hb_000260_700--Hb_005016_030 Hb_000318_140 Hb_000318_140 Hb_009615_110--Hb_000318_140 Hb_002955_010 Hb_002955_010 Hb_009615_110--Hb_002955_010 Hb_001009_050 Hb_001009_050 Hb_009615_110--Hb_001009_050 Hb_000270_450 Hb_000270_450 Hb_009615_110--Hb_000270_450 Hb_006173_020 Hb_006173_020 Hb_009615_110--Hb_006173_020 Hb_003777_220--Hb_011316_030 Hb_003734_130 Hb_003734_130 Hb_003777_220--Hb_003734_130 Hb_003777_220--Hb_000176_140 Hb_000684_180 Hb_000684_180 Hb_003777_220--Hb_000684_180 Hb_012807_120 Hb_012807_120 Hb_003777_220--Hb_012807_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
77.4361 17.1266 2.63117 3.90329 80.6948 84.795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.1348 21.0186 22.5622 10.4636 5.10859

CAGE analysis