Hb_000321_040

Information

Type transcription factor
Description TF Family: Orphans
Location Contig321: 59354-60956
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24010g
description hypothetical protein
nr
ID XP_012064939.1
description PREDICTED: zinc finger protein CONSTANS-LIKE 5 [Jatropha curcas]
swissprot
ID Q9SK53
description Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1
trembl
ID A0A067LHT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05627 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000321_040 0.0 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 5 [Jatropha curcas]
2 Hb_006120_140 0.0638645029 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
3 Hb_020273_020 0.081303465 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_000000_040 0.0843598961 - - PREDICTED: inactive protein kinase SELMODRAFT_444075-like [Jatropha curcas]
5 Hb_000621_100 0.0856163439 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001890_040 0.0919354986 - - receptor-kinase, putative [Ricinus communis]
7 Hb_028013_030 0.1090122071 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_000227_020 0.1238081229 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
9 Hb_005066_050 0.1303607832 - - -
10 Hb_036182_010 0.1328998564 - - hypothetical protein POPTR_0473s00220g [Populus trichocarpa]
11 Hb_001769_150 0.1331580216 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
12 Hb_000358_010 0.1353485518 - - PREDICTED: basic blue protein [Populus euphratica]
13 Hb_000175_210 0.136026398 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
14 Hb_000025_770 0.1433227164 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
15 Hb_061361_010 0.1470086873 - - kinase, putative [Ricinus communis]
16 Hb_002874_010 0.1512674485 - - PREDICTED: replication protein A 32 kDa subunit A isoform X1 [Jatropha curcas]
17 Hb_007044_260 0.1536044366 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
18 Hb_006316_090 0.1570769075 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
19 Hb_008725_110 0.1571654525 - - PREDICTED: leucine-rich repeat extensin-like protein 1 [Jatropha curcas]
20 Hb_001076_010 0.1590517604 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000321_040 Hb_000321_040 Hb_006120_140 Hb_006120_140 Hb_000321_040--Hb_006120_140 Hb_020273_020 Hb_020273_020 Hb_000321_040--Hb_020273_020 Hb_000000_040 Hb_000000_040 Hb_000321_040--Hb_000000_040 Hb_000621_100 Hb_000621_100 Hb_000321_040--Hb_000621_100 Hb_001890_040 Hb_001890_040 Hb_000321_040--Hb_001890_040 Hb_028013_030 Hb_028013_030 Hb_000321_040--Hb_028013_030 Hb_006120_140--Hb_000621_100 Hb_006120_140--Hb_000000_040 Hb_006120_140--Hb_020273_020 Hb_006120_140--Hb_001890_040 Hb_005066_050 Hb_005066_050 Hb_006120_140--Hb_005066_050 Hb_020273_020--Hb_000000_040 Hb_000175_210 Hb_000175_210 Hb_020273_020--Hb_000175_210 Hb_020273_020--Hb_001890_040 Hb_020273_020--Hb_000621_100 Hb_000000_040--Hb_005066_050 Hb_000000_040--Hb_000621_100 Hb_008725_110 Hb_008725_110 Hb_000000_040--Hb_008725_110 Hb_000025_770 Hb_000025_770 Hb_000621_100--Hb_000025_770 Hb_061361_010 Hb_061361_010 Hb_000621_100--Hb_061361_010 Hb_000621_100--Hb_005066_050 Hb_001890_040--Hb_028013_030 Hb_001890_040--Hb_000175_210 Hb_001890_040--Hb_000000_040 Hb_028013_030--Hb_006120_140 Hb_028013_030--Hb_020273_020 Hb_028013_030--Hb_000175_210 Hb_028013_030--Hb_000621_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.034594 3.16799 0.658343 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.62892 0

CAGE analysis