Hb_000321_070

Information

Type -
Description -
Location Contig321: 124679-129064
Sequence    

Annotation

kegg
ID rcu:RCOM_1263980
description protein with unknown function
nr
ID XP_002532809.1
description protein with unknown function [Ricinus communis]
swissprot
ID O88796
description Ribonuclease P protein subunit p30 OS=Mus musculus GN=Rpp30 PE=2 SV=1
trembl
ID B9T3J0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1263980 PE=4 SV=1
Gene Ontology
ID GO:0034641
description polymerase histidinol phosphatase- isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33939: 126835-126971 , PASA_asmbl_33940: 127275-128840 , PASA_asmbl_33941: 127427-127742
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000321_070 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_000085_160 0.0696922418 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
3 Hb_001790_020 0.0696975691 - - PREDICTED: uncharacterized protein LOC105642165 [Jatropha curcas]
4 Hb_001571_040 0.074472322 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
5 Hb_000245_130 0.0766360441 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
6 Hb_000103_180 0.076731484 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
7 Hb_039837_010 0.0770882613 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
8 Hb_002811_360 0.0781925615 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
9 Hb_048937_040 0.0786108124 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
10 Hb_004724_200 0.0797223928 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
11 Hb_002149_020 0.0821656039 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
12 Hb_185830_020 0.08345659 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_000300_060 0.083796983 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
14 Hb_001771_090 0.0850156418 - - PREDICTED: uncharacterized protein LOC105634551 [Jatropha curcas]
15 Hb_002196_020 0.0854180748 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_000057_040 0.0860711374 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_002609_110 0.0864643722 - - hypothetical protein JCGZ_08497 [Jatropha curcas]
18 Hb_012634_010 0.0873782354 - - PREDICTED: uncharacterized protein LOC105110292 [Populus euphratica]
19 Hb_000640_240 0.087411867 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
20 Hb_006332_020 0.0875362596 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]

Gene co-expression network

sample Hb_000321_070 Hb_000321_070 Hb_000085_160 Hb_000085_160 Hb_000321_070--Hb_000085_160 Hb_001790_020 Hb_001790_020 Hb_000321_070--Hb_001790_020 Hb_001571_040 Hb_001571_040 Hb_000321_070--Hb_001571_040 Hb_000245_130 Hb_000245_130 Hb_000321_070--Hb_000245_130 Hb_000103_180 Hb_000103_180 Hb_000321_070--Hb_000103_180 Hb_039837_010 Hb_039837_010 Hb_000321_070--Hb_039837_010 Hb_007317_110 Hb_007317_110 Hb_000085_160--Hb_007317_110 Hb_003525_010 Hb_003525_010 Hb_000085_160--Hb_003525_010 Hb_000011_200 Hb_000011_200 Hb_000085_160--Hb_000011_200 Hb_000630_050 Hb_000630_050 Hb_000085_160--Hb_000630_050 Hb_003665_060 Hb_003665_060 Hb_000085_160--Hb_003665_060 Hb_000010_330 Hb_000010_330 Hb_000085_160--Hb_000010_330 Hb_012634_010 Hb_012634_010 Hb_001790_020--Hb_012634_010 Hb_001790_020--Hb_001571_040 Hb_106371_010 Hb_106371_010 Hb_001790_020--Hb_106371_010 Hb_000160_040 Hb_000160_040 Hb_001790_020--Hb_000160_040 Hb_000123_210 Hb_000123_210 Hb_001790_020--Hb_000123_210 Hb_000300_060 Hb_000300_060 Hb_001571_040--Hb_000300_060 Hb_000032_570 Hb_000032_570 Hb_001571_040--Hb_000032_570 Hb_006332_020 Hb_006332_020 Hb_001571_040--Hb_006332_020 Hb_066182_010 Hb_066182_010 Hb_001571_040--Hb_066182_010 Hb_001571_040--Hb_012634_010 Hb_000032_290 Hb_000032_290 Hb_000245_130--Hb_000032_290 Hb_004128_190 Hb_004128_190 Hb_000245_130--Hb_004128_190 Hb_003847_080 Hb_003847_080 Hb_000245_130--Hb_003847_080 Hb_005333_070 Hb_005333_070 Hb_000245_130--Hb_005333_070 Hb_002374_160 Hb_002374_160 Hb_000245_130--Hb_002374_160 Hb_002078_150 Hb_002078_150 Hb_000245_130--Hb_002078_150 Hb_007426_030 Hb_007426_030 Hb_000103_180--Hb_007426_030 Hb_002079_010 Hb_002079_010 Hb_000103_180--Hb_002079_010 Hb_004724_200 Hb_004724_200 Hb_000103_180--Hb_004724_200 Hb_004109_090 Hb_004109_090 Hb_000103_180--Hb_004109_090 Hb_002811_360 Hb_002811_360 Hb_000103_180--Hb_002811_360 Hb_000483_200 Hb_000483_200 Hb_000103_180--Hb_000483_200 Hb_039837_010--Hb_002811_360 Hb_003058_130 Hb_003058_130 Hb_039837_010--Hb_003058_130 Hb_009111_050 Hb_009111_050 Hb_039837_010--Hb_009111_050 Hb_001454_210 Hb_001454_210 Hb_039837_010--Hb_001454_210 Hb_028872_140 Hb_028872_140 Hb_039837_010--Hb_028872_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.23695 1.27549 0.782383 1.64114 2.97002 3.93031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.17218 3.04602 2.34526 2.31503 1.00262

CAGE analysis