Hb_000321_080

Information

Type -
Description -
Location Contig321: 139721-140032
Sequence    

Annotation

kegg
ID ppp:PHYPADRAFT_152862
description HFO1503; histone H4
nr
ID ACG30677.1
description histone H4 [Zea mays]
swissprot
ID P0CG89
description Histone H4 OS=Glycine max PE=3 SV=1
trembl
ID Q5NSW2
description Histone H4 (Fragment) OS=Fragaria ananassa PE=2 SV=1
Gene Ontology
ID GO:0000786
description histone h4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33942: 139649-140257
cDNA
(Sanger)
(ID:Location)		 002_A17.ab1: 139745-140166 , 031_O12.ab1: 139649-140158

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000321_080 0.0 - - histone H4 [Zea mays]
2 Hb_000345_410 0.1224302137 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
3 Hb_002007_280 0.1285557984 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
4 Hb_044662_050 0.133258101 - - hypothetical protein POPTR_0002s08440g [Populus trichocarpa]
5 Hb_005162_130 0.1397118552 - - PREDICTED: uncharacterized protein LOC105648433 isoform X2 [Jatropha curcas]
6 Hb_002007_040 0.152361185 - - unnamed protein product [Coffea canephora]
7 Hb_008406_100 0.1595037917 - - PREDICTED: protein TPX2 isoform X2 [Jatropha curcas]
8 Hb_010998_050 0.1766250917 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
9 Hb_002307_020 0.1771022309 - - PREDICTED: histone H1-like [Jatropha curcas]
10 Hb_036790_030 0.1796362699 - - PREDICTED: UPF0544 protein C5orf45 homolog [Jatropha curcas]
11 Hb_000345_130 0.1901446235 - - unnamed protein product [Coffea canephora]
12 Hb_000638_260 0.1907736476 - - hypothetical protein JCGZ_06730 [Jatropha curcas]
13 Hb_001501_070 0.1945766576 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
14 Hb_011360_130 0.1966088749 - - conserved hypothetical protein [Ricinus communis]
15 Hb_029510_130 0.1975908647 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
16 Hb_000349_230 0.1977826962 - - PREDICTED: protein TPX2 [Jatropha curcas]
17 Hb_001478_020 0.1992477395 desease resistance Gene Name: AAA thyroid hormone receptor interactor, putative [Ricinus communis]
18 Hb_000365_210 0.2010607748 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
19 Hb_001279_050 0.202406845 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
20 Hb_025214_120 0.2038003001 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]

Gene co-expression network

sample Hb_000321_080 Hb_000321_080 Hb_000345_410 Hb_000345_410 Hb_000321_080--Hb_000345_410 Hb_002007_280 Hb_002007_280 Hb_000321_080--Hb_002007_280 Hb_044662_050 Hb_044662_050 Hb_000321_080--Hb_044662_050 Hb_005162_130 Hb_005162_130 Hb_000321_080--Hb_005162_130 Hb_002007_040 Hb_002007_040 Hb_000321_080--Hb_002007_040 Hb_008406_100 Hb_008406_100 Hb_000321_080--Hb_008406_100 Hb_000345_410--Hb_002007_280 Hb_000345_410--Hb_005162_130 Hb_000345_410--Hb_008406_100 Hb_010998_050 Hb_010998_050 Hb_000345_410--Hb_010998_050 Hb_000345_130 Hb_000345_130 Hb_000345_410--Hb_000345_130 Hb_002007_280--Hb_005162_130 Hb_002007_280--Hb_000345_130 Hb_002007_280--Hb_008406_100 Hb_000349_230 Hb_000349_230 Hb_002007_280--Hb_000349_230 Hb_029510_130 Hb_029510_130 Hb_002007_280--Hb_029510_130 Hb_044662_050--Hb_002007_040 Hb_002221_010 Hb_002221_010 Hb_044662_050--Hb_002221_010 Hb_004449_140 Hb_004449_140 Hb_044662_050--Hb_004449_140 Hb_000653_020 Hb_000653_020 Hb_044662_050--Hb_000653_020 Hb_044662_050--Hb_002007_280 Hb_005162_130--Hb_008406_100 Hb_005162_130--Hb_000345_130 Hb_005162_130--Hb_000349_230 Hb_005162_130--Hb_010998_050 Hb_002307_020 Hb_002307_020 Hb_002007_040--Hb_002307_020 Hb_000051_080 Hb_000051_080 Hb_002007_040--Hb_000051_080 Hb_001478_020 Hb_001478_020 Hb_002007_040--Hb_001478_020 Hb_005725_150 Hb_005725_150 Hb_002007_040--Hb_005725_150 Hb_001501_070 Hb_001501_070 Hb_002007_040--Hb_001501_070 Hb_003784_040 Hb_003784_040 Hb_002007_040--Hb_003784_040 Hb_024973_020 Hb_024973_020 Hb_008406_100--Hb_024973_020 Hb_000365_210 Hb_000365_210 Hb_008406_100--Hb_000365_210 Hb_008406_100--Hb_001501_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
182.409 29.2259 1438.93 254.532 39.9469 56.1744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
126.048 70.3262 33.3597 83.7806 42.2071

CAGE analysis