Hb_000321_110

Information

Type -
Description -
Location Contig321: 168103-168561
Sequence    

Annotation

kegg
ID tcc:TCM_041937
description hypothetical protein
nr
ID XP_007016573.1
description Uncharacterized protein TCM_041937 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GYC9
description Uncharacterized protein OS=Theobroma cacao GN=TCM_041937 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33944: 168385-168582
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000321_110 0.0 - - Uncharacterized protein TCM_041937 [Theobroma cacao]
2 Hb_024071_030 0.0640207088 - - hypothetical protein CICLE_v10025479mg [Citrus clementina]
3 Hb_009663_020 0.0668773573 - - -
4 Hb_001652_100 0.0690253818 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
5 Hb_163566_010 0.0690496232 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Amborella trichopoda]
6 Hb_007120_120 0.0767623147 - - protein binding protein, putative [Ricinus communis]
7 Hb_007922_030 0.0807743174 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
8 Hb_012035_010 0.08149457 - - hypothetical protein JCGZ_21143 [Jatropha curcas]
9 Hb_000487_080 0.0883832029 - - PREDICTED: probable potassium transporter 13 [Jatropha curcas]
10 Hb_016734_100 0.0887910211 - - -
11 Hb_008021_060 0.0919910212 - - Squalene monooxygenase, putative [Ricinus communis]
12 Hb_001021_120 0.0921587519 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]
13 Hb_000556_060 0.0923385454 - - hypothetical protein OsJ_28181 [Oryza sativa Japonica Group]
14 Hb_005833_010 0.0936707618 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
15 Hb_031022_030 0.0968093177 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7-like [Jatropha curcas]
16 Hb_000847_090 0.0982998708 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
17 Hb_001426_020 0.0988082935 - - hypothetical protein CICLE_v10033594mg, partial [Citrus clementina]
18 Hb_000676_360 0.1004755054 - - hypothetical protein POPTR_0007s13690g [Populus trichocarpa]
19 Hb_001642_020 0.1032828962 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
20 Hb_000058_180 0.1038129105 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000321_110 Hb_000321_110 Hb_024071_030 Hb_024071_030 Hb_000321_110--Hb_024071_030 Hb_009663_020 Hb_009663_020 Hb_000321_110--Hb_009663_020 Hb_001652_100 Hb_001652_100 Hb_000321_110--Hb_001652_100 Hb_163566_010 Hb_163566_010 Hb_000321_110--Hb_163566_010 Hb_007120_120 Hb_007120_120 Hb_000321_110--Hb_007120_120 Hb_007922_030 Hb_007922_030 Hb_000321_110--Hb_007922_030 Hb_024071_030--Hb_009663_020 Hb_024071_030--Hb_007120_120 Hb_000556_060 Hb_000556_060 Hb_024071_030--Hb_000556_060 Hb_024071_030--Hb_163566_010 Hb_009847_010 Hb_009847_010 Hb_024071_030--Hb_009847_010 Hb_009663_020--Hb_007120_120 Hb_009663_020--Hb_163566_010 Hb_016734_100 Hb_016734_100 Hb_009663_020--Hb_016734_100 Hb_009663_020--Hb_001652_100 Hb_008021_060 Hb_008021_060 Hb_001652_100--Hb_008021_060 Hb_001652_100--Hb_007120_120 Hb_001652_100--Hb_007922_030 Hb_000058_180 Hb_000058_180 Hb_001652_100--Hb_000058_180 Hb_001652_100--Hb_016734_100 Hb_005833_010 Hb_005833_010 Hb_163566_010--Hb_005833_010 Hb_163566_010--Hb_016734_100 Hb_001426_020 Hb_001426_020 Hb_163566_010--Hb_001426_020 Hb_000487_080 Hb_000487_080 Hb_163566_010--Hb_000487_080 Hb_007120_120--Hb_016734_100 Hb_007120_120--Hb_163566_010 Hb_001642_020 Hb_001642_020 Hb_007120_120--Hb_001642_020 Hb_007221_020 Hb_007221_020 Hb_007922_030--Hb_007221_020 Hb_007922_030--Hb_008021_060 Hb_001021_120 Hb_001021_120 Hb_007922_030--Hb_001021_120 Hb_007922_030--Hb_000058_180 Hb_031321_020 Hb_031321_020 Hb_007922_030--Hb_031321_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.60026 2.54611 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0510958 1.78433

CAGE analysis