Hb_000321_120

Information

Type -
Description -
Location Contig321: 174123-176621
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24080g
description POPTRDRAFT_838390; kinase family protein
nr
ID XP_012064945.1
description PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
swissprot
ID Q9LX66
description Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1
trembl
ID A0A067LIT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05631 PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor-like protein kinase herk 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33945: 173642-176106
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000321_120 0.0 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
2 Hb_029748_020 0.0988274736 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000340_360 0.1137714912 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
4 Hb_000221_180 0.1181162164 - - VQ motif-containing family protein [Populus trichocarpa]
5 Hb_000175_270 0.1273228385 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
6 Hb_013399_090 0.1278983589 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
7 Hb_001269_050 0.1297565718 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
8 Hb_000066_040 0.1310348299 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
9 Hb_155150_010 0.1353768406 - - kinase, putative [Ricinus communis]
10 Hb_000369_080 0.1356268564 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
11 Hb_002909_100 0.1357483165 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
12 Hb_003912_080 0.1399136567 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
13 Hb_014006_010 0.1404478318 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
14 Hb_005155_010 0.1405516573 - - amino acid transporter, putative [Ricinus communis]
15 Hb_001499_070 0.141985581 - - PREDICTED: calcium-transporting ATPase 9, plasma membrane-type isoform X1 [Jatropha curcas]
16 Hb_000473_120 0.1424270505 - - hypothetical protein JCGZ_16177 [Jatropha curcas]
17 Hb_001446_060 0.1439235264 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
18 Hb_002026_030 0.1443689667 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
19 Hb_001408_020 0.1449835976 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
20 Hb_025045_010 0.1450142202 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_000321_120 Hb_000321_120 Hb_029748_020 Hb_029748_020 Hb_000321_120--Hb_029748_020 Hb_000340_360 Hb_000340_360 Hb_000321_120--Hb_000340_360 Hb_000221_180 Hb_000221_180 Hb_000321_120--Hb_000221_180 Hb_000175_270 Hb_000175_270 Hb_000321_120--Hb_000175_270 Hb_013399_090 Hb_013399_090 Hb_000321_120--Hb_013399_090 Hb_001269_050 Hb_001269_050 Hb_000321_120--Hb_001269_050 Hb_000100_210 Hb_000100_210 Hb_029748_020--Hb_000100_210 Hb_001522_040 Hb_001522_040 Hb_029748_020--Hb_001522_040 Hb_002099_060 Hb_002099_060 Hb_029748_020--Hb_002099_060 Hb_000438_020 Hb_000438_020 Hb_029748_020--Hb_000438_020 Hb_155150_010 Hb_155150_010 Hb_029748_020--Hb_155150_010 Hb_014006_010 Hb_014006_010 Hb_000340_360--Hb_014006_010 Hb_000369_080 Hb_000369_080 Hb_000340_360--Hb_000369_080 Hb_001951_100 Hb_001951_100 Hb_000340_360--Hb_001951_100 Hb_013405_180 Hb_013405_180 Hb_000340_360--Hb_013405_180 Hb_000340_360--Hb_013399_090 Hb_005183_140 Hb_005183_140 Hb_000340_360--Hb_005183_140 Hb_000221_180--Hb_014006_010 Hb_073973_020 Hb_073973_020 Hb_000221_180--Hb_073973_020 Hb_000221_180--Hb_000175_270 Hb_001496_120 Hb_001496_120 Hb_000221_180--Hb_001496_120 Hb_001307_200 Hb_001307_200 Hb_000221_180--Hb_001307_200 Hb_000221_180--Hb_013399_090 Hb_187005_010 Hb_187005_010 Hb_000175_270--Hb_187005_010 Hb_001499_070 Hb_001499_070 Hb_000175_270--Hb_001499_070 Hb_000175_270--Hb_014006_010 Hb_019863_060 Hb_019863_060 Hb_000175_270--Hb_019863_060 Hb_000175_270--Hb_000340_360 Hb_013399_090--Hb_014006_010 Hb_000025_500 Hb_000025_500 Hb_013399_090--Hb_000025_500 Hb_000320_360 Hb_000320_360 Hb_013399_090--Hb_000320_360 Hb_001408_120 Hb_001408_120 Hb_013399_090--Hb_001408_120 Hb_004586_090 Hb_004586_090 Hb_013399_090--Hb_004586_090 Hb_000492_080 Hb_000492_080 Hb_001269_050--Hb_000492_080 Hb_014720_030 Hb_014720_030 Hb_001269_050--Hb_014720_030 Hb_001998_220 Hb_001998_220 Hb_001269_050--Hb_001998_220 Hb_001269_050--Hb_013405_180 Hb_011616_040 Hb_011616_040 Hb_001269_050--Hb_011616_040 Hb_001054_120 Hb_001054_120 Hb_001269_050--Hb_001054_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.85857 22.1044 10.7317 15.5889 3.19901 4.80249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.02521 0.681545 2.59854 9.75978 25.0416

CAGE analysis