Hb_000321_140

Information

Type -
Description -
Location Contig321: 205002-211996
Sequence    

Annotation

kegg
ID rcu:RCOM_1313900
description RNA-binding protein, putative
nr
ID XP_002518926.1
description RNA-binding protein, putative [Ricinus communis]
swissprot
ID Q9LPI5
description Polyadenylate-binding protein-interacting protein 11 OS=Arabidopsis thaliana GN=CID11 PE=2 SV=1
trembl
ID B9RYV7
description RNA-binding protein, putative OS=Ricinus communis GN=RCOM_1313900 PE=4 SV=1
Gene Ontology
ID GO:0000166
description polyadenylate-binding protein-interacting protein 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33949: 205004-211863 , PASA_asmbl_33950: 205004-211566
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000321_140 0.0 - - RNA-binding protein, putative [Ricinus communis]
2 Hb_002055_020 0.0518832582 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
3 Hb_000085_170 0.0595136938 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
4 Hb_001009_280 0.0601812364 - - PREDICTED: telomere length regulation protein TEL2 homolog [Jatropha curcas]
5 Hb_000610_040 0.0633556155 - - PREDICTED: uncharacterized protein LOC105635307 isoform X1 [Jatropha curcas]
6 Hb_000510_360 0.0638056453 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
7 Hb_000880_070 0.0647355285 - - gamma-tubulin complex component, putative [Ricinus communis]
8 Hb_003758_010 0.0724202828 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
9 Hb_000254_100 0.0791471568 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
10 Hb_033312_040 0.080487896 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
11 Hb_007894_150 0.0805684627 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
12 Hb_000390_230 0.080609408 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
13 Hb_006189_020 0.0836026713 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
14 Hb_027506_010 0.0837694433 - - PREDICTED: cullin-4 [Jatropha curcas]
15 Hb_008054_040 0.084643724 - - PREDICTED: cullin-4 [Jatropha curcas]
16 Hb_000975_210 0.0846623555 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
17 Hb_183510_020 0.0851577238 - - coated vesicle membrane protein, putative [Ricinus communis]
18 Hb_000567_070 0.0853459411 - - autophagy protein, putative [Ricinus communis]
19 Hb_001348_080 0.0853838394 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
20 Hb_012506_030 0.0855110428 - - AP-2 complex subunit alpha, putative [Ricinus communis]

Gene co-expression network

sample Hb_000321_140 Hb_000321_140 Hb_002055_020 Hb_002055_020 Hb_000321_140--Hb_002055_020 Hb_000085_170 Hb_000085_170 Hb_000321_140--Hb_000085_170 Hb_001009_280 Hb_001009_280 Hb_000321_140--Hb_001009_280 Hb_000610_040 Hb_000610_040 Hb_000321_140--Hb_000610_040 Hb_000510_360 Hb_000510_360 Hb_000321_140--Hb_000510_360 Hb_000880_070 Hb_000880_070 Hb_000321_140--Hb_000880_070 Hb_002055_020--Hb_001009_280 Hb_000254_100 Hb_000254_100 Hb_002055_020--Hb_000254_100 Hb_000567_070 Hb_000567_070 Hb_002055_020--Hb_000567_070 Hb_000390_230 Hb_000390_230 Hb_002055_020--Hb_000390_230 Hb_170416_010 Hb_170416_010 Hb_002055_020--Hb_170416_010 Hb_000085_170--Hb_000510_360 Hb_000702_090 Hb_000702_090 Hb_000085_170--Hb_000702_090 Hb_012506_030 Hb_012506_030 Hb_000085_170--Hb_012506_030 Hb_033312_040 Hb_033312_040 Hb_000085_170--Hb_033312_040 Hb_002326_110 Hb_002326_110 Hb_000085_170--Hb_002326_110 Hb_183510_020 Hb_183510_020 Hb_001009_280--Hb_183510_020 Hb_002046_010 Hb_002046_010 Hb_001009_280--Hb_002046_010 Hb_000617_230 Hb_000617_230 Hb_001009_280--Hb_000617_230 Hb_027506_010 Hb_027506_010 Hb_001009_280--Hb_027506_010 Hb_003436_020 Hb_003436_020 Hb_000610_040--Hb_003436_020 Hb_103747_020 Hb_103747_020 Hb_000610_040--Hb_103747_020 Hb_003186_020 Hb_003186_020 Hb_000610_040--Hb_003186_020 Hb_007894_160 Hb_007894_160 Hb_000610_040--Hb_007894_160 Hb_000610_040--Hb_000702_090 Hb_000510_360--Hb_033312_040 Hb_003758_010 Hb_003758_010 Hb_000510_360--Hb_003758_010 Hb_006189_020 Hb_006189_020 Hb_000510_360--Hb_006189_020 Hb_001817_170 Hb_001817_170 Hb_000510_360--Hb_001817_170 Hb_004339_040 Hb_004339_040 Hb_000880_070--Hb_004339_040 Hb_004100_050 Hb_004100_050 Hb_000880_070--Hb_004100_050 Hb_000880_070--Hb_002055_020 Hb_000880_070--Hb_000254_100 Hb_001824_080 Hb_001824_080 Hb_000880_070--Hb_001824_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.42785 11.2526 18.1238 8.79552 10.0387 8.31603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.94709 6.14077 8.51571 14.5249 11.752

CAGE analysis