Hb_000321_150

Information

Type -
Description -
Location Contig321: 214971-221965
Sequence    

Annotation

kegg
ID pop:POPTR_0001s45300g
description POPTRDRAFT_550449; hypothetical protein
nr
ID XP_012086625.1
description PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
swissprot
ID Q9C810
description PHD finger protein At1g33420 OS=Arabidopsis thaliana GN=At1g33420 PE=1 SV=1
trembl
ID A0A067K0D4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20375 PE=4 SV=1
Gene Ontology
ID GO:0008233
description ring fyve phd zinc finger superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33952: 215092-219764 , PASA_asmbl_33953: 217274-217454 , PASA_asmbl_33954: 219775-221887
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000321_150 0.0 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
2 Hb_003729_030 0.0467456987 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
3 Hb_006117_080 0.0561396629 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
4 Hb_000069_470 0.0591399107 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
5 Hb_000661_130 0.0647030997 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
6 Hb_009767_080 0.0673288093 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
7 Hb_000977_120 0.067597916 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
8 Hb_001104_190 0.0691616544 - - PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
9 Hb_011242_060 0.0692893227 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
10 Hb_019430_020 0.0712588086 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
11 Hb_007575_080 0.0748534338 - - PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
12 Hb_005539_090 0.0749598983 transcription factor TF Family: PHD PREDICTED: methyl-CpG-binding domain-containing protein 9 isoform X1 [Jatropha curcas]
13 Hb_024185_010 0.0751339195 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
14 Hb_002253_080 0.0753038054 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
15 Hb_000260_640 0.0760372607 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
16 Hb_004483_040 0.0763405833 - - hypothetical protein JCGZ_22047 [Jatropha curcas]
17 Hb_001967_030 0.0766958449 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
18 Hb_005656_040 0.0769622841 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
19 Hb_000260_070 0.0776367055 - - kinase, putative [Ricinus communis]
20 Hb_001054_030 0.0796346493 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]

Gene co-expression network

sample Hb_000321_150 Hb_000321_150 Hb_003729_030 Hb_003729_030 Hb_000321_150--Hb_003729_030 Hb_006117_080 Hb_006117_080 Hb_000321_150--Hb_006117_080 Hb_000069_470 Hb_000069_470 Hb_000321_150--Hb_000069_470 Hb_000661_130 Hb_000661_130 Hb_000321_150--Hb_000661_130 Hb_009767_080 Hb_009767_080 Hb_000321_150--Hb_009767_080 Hb_000977_120 Hb_000977_120 Hb_000321_150--Hb_000977_120 Hb_003729_030--Hb_000069_470 Hb_002253_080 Hb_002253_080 Hb_003729_030--Hb_002253_080 Hb_000120_660 Hb_000120_660 Hb_003729_030--Hb_000120_660 Hb_000260_070 Hb_000260_070 Hb_003729_030--Hb_000260_070 Hb_011242_060 Hb_011242_060 Hb_003729_030--Hb_011242_060 Hb_001104_190 Hb_001104_190 Hb_006117_080--Hb_001104_190 Hb_006117_080--Hb_000069_470 Hb_009150_020 Hb_009150_020 Hb_006117_080--Hb_009150_020 Hb_024185_010 Hb_024185_010 Hb_006117_080--Hb_024185_010 Hb_000260_640 Hb_000260_640 Hb_006117_080--Hb_000260_640 Hb_000069_470--Hb_011242_060 Hb_031042_050 Hb_031042_050 Hb_000069_470--Hb_031042_050 Hb_000025_280 Hb_000025_280 Hb_000069_470--Hb_000025_280 Hb_000069_470--Hb_001104_190 Hb_004483_040 Hb_004483_040 Hb_000069_470--Hb_004483_040 Hb_019430_020 Hb_019430_020 Hb_000661_130--Hb_019430_020 Hb_000661_130--Hb_006117_080 Hb_000661_130--Hb_000069_470 Hb_010712_040 Hb_010712_040 Hb_000661_130--Hb_010712_040 Hb_000661_130--Hb_004483_040 Hb_009767_080--Hb_019430_020 Hb_000890_050 Hb_000890_050 Hb_009767_080--Hb_000890_050 Hb_000684_250 Hb_000684_250 Hb_009767_080--Hb_000684_250 Hb_009898_010 Hb_009898_010 Hb_009767_080--Hb_009898_010 Hb_009767_080--Hb_000069_470 Hb_002235_300 Hb_002235_300 Hb_000977_120--Hb_002235_300 Hb_000977_120--Hb_002253_080 Hb_000977_120--Hb_003729_030 Hb_002615_090 Hb_002615_090 Hb_000977_120--Hb_002615_090 Hb_000025_320 Hb_000025_320 Hb_000977_120--Hb_000025_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.42029 24.8702 6.28598 7.82346 11.4974 13.2713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.6269 5.71266 11.2073 10.1274 12.5728

CAGE analysis