Hb_000321_170

Information

Type -
Description -
Location Contig321: 243108-245298
Sequence    

Annotation

kegg
ID rcu:RCOM_1314040
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_012086629.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
swissprot
ID Q8L868
description Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1
trembl
ID A0A067JMN2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20377 PE=3 SV=1
Gene Ontology
ID GO:0042973
description glucan endo- -beta-glucosidase 11 isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33960: 243111-244795
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000321_170 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
2 Hb_002267_060 0.0752667034 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
3 Hb_002045_210 0.0869392514 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
4 Hb_005496_040 0.099233212 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
5 Hb_000022_080 0.1058174883 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
6 Hb_000120_930 0.111857013 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
7 Hb_005890_020 0.1176420325 - - putative plant disease resistance family protein [Populus trichocarpa]
8 Hb_000003_750 0.1241574232 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
9 Hb_008686_010 0.1257312555 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004117_090 0.1293006537 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 [Jatropha curcas]
11 Hb_070498_010 0.1305446934 - - receptor kinase, putative [Ricinus communis]
12 Hb_003750_120 0.1306559997 - - PREDICTED: uncharacterized protein LOC105112992 [Populus euphratica]
13 Hb_001195_550 0.1311642564 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
14 Hb_028487_060 0.1311646702 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
15 Hb_002301_400 0.1319916555 - - structural constituent of cell wall, putative [Ricinus communis]
16 Hb_000342_040 0.1331944708 - - pollen specific protein sf21, putative [Ricinus communis]
17 Hb_001186_100 0.1338787819 - - PREDICTED: uncharacterized protein LOC105640806 isoform X1 [Jatropha curcas]
18 Hb_168918_010 0.1375120111 - - pectin acetylesterase, putative [Ricinus communis]
19 Hb_003086_160 0.1386019057 - - hypothetical protein POPTR_0006s21590g [Populus trichocarpa]
20 Hb_128196_010 0.1409530527 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000321_170 Hb_000321_170 Hb_002267_060 Hb_002267_060 Hb_000321_170--Hb_002267_060 Hb_002045_210 Hb_002045_210 Hb_000321_170--Hb_002045_210 Hb_005496_040 Hb_005496_040 Hb_000321_170--Hb_005496_040 Hb_000022_080 Hb_000022_080 Hb_000321_170--Hb_000022_080 Hb_000120_930 Hb_000120_930 Hb_000321_170--Hb_000120_930 Hb_005890_020 Hb_005890_020 Hb_000321_170--Hb_005890_020 Hb_002267_060--Hb_000120_930 Hb_002267_060--Hb_002045_210 Hb_028487_060 Hb_028487_060 Hb_002267_060--Hb_028487_060 Hb_003086_160 Hb_003086_160 Hb_002267_060--Hb_003086_160 Hb_002267_060--Hb_000022_080 Hb_001056_040 Hb_001056_040 Hb_002045_210--Hb_001056_040 Hb_002045_210--Hb_005496_040 Hb_000342_040 Hb_000342_040 Hb_002045_210--Hb_000342_040 Hb_003750_120 Hb_003750_120 Hb_002045_210--Hb_003750_120 Hb_002045_210--Hb_000022_080 Hb_005496_040--Hb_000342_040 Hb_005496_040--Hb_003750_120 Hb_008686_010 Hb_008686_010 Hb_005496_040--Hb_008686_010 Hb_000032_420 Hb_000032_420 Hb_005496_040--Hb_000032_420 Hb_004117_090 Hb_004117_090 Hb_005496_040--Hb_004117_090 Hb_000003_750 Hb_000003_750 Hb_005496_040--Hb_000003_750 Hb_000022_080--Hb_005496_040 Hb_004195_070 Hb_004195_070 Hb_000022_080--Hb_004195_070 Hb_000441_130 Hb_000441_130 Hb_000022_080--Hb_000441_130 Hb_002818_060 Hb_002818_060 Hb_000022_080--Hb_002818_060 Hb_004254_060 Hb_004254_060 Hb_000120_930--Hb_004254_060 Hb_003750_090 Hb_003750_090 Hb_000120_930--Hb_003750_090 Hb_000120_930--Hb_002045_210 Hb_001431_090 Hb_001431_090 Hb_000120_930--Hb_001431_090 Hb_005890_020--Hb_005496_040 Hb_001080_190 Hb_001080_190 Hb_005890_020--Hb_001080_190 Hb_002301_400 Hb_002301_400 Hb_005890_020--Hb_002301_400 Hb_001439_080 Hb_001439_080 Hb_005890_020--Hb_001439_080 Hb_017383_010 Hb_017383_010 Hb_005890_020--Hb_017383_010 Hb_000103_220 Hb_000103_220 Hb_005890_020--Hb_000103_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.78741 3.80227 36.7347 44.1156 1.54435 0.510763
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.243039 0.0546272 0.153379 3.24237 13.4877

CAGE analysis