Hb_000322_020

Information

Type -
Description -
Location Contig322: 34135-35721
Sequence    

Annotation

kegg
ID rcu:RCOM_1046590
description hypothetical protein
nr
ID XP_012076974.1
description PREDICTED: uncharacterized protein LOC105637914 [Jatropha curcas]
swissprot
ID Q96MB7
description Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1
trembl
ID B9RK54
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1046590 PE=4 SV=1
Gene Ontology
ID GO:0005622
description nuclease harbi1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000322_020 0.0 - - PREDICTED: uncharacterized protein LOC105637914 [Jatropha curcas]
2 Hb_004586_120 0.0503280083 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
3 Hb_000422_050 0.0680289809 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
4 Hb_002849_030 0.0787909784 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
5 Hb_001257_040 0.084482719 - - PREDICTED: uncharacterized protein LOC105640055 [Jatropha curcas]
6 Hb_000347_360 0.0886949271 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
7 Hb_000529_050 0.0917771064 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
8 Hb_001477_080 0.0933733614 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
9 Hb_048538_010 0.1016592438 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Prunus mume]
10 Hb_073870_020 0.1027224182 - - PREDICTED: probable receptor-like protein kinase At1g67000, partial [Jatropha curcas]
11 Hb_125201_010 0.1064939151 - - hypothetical protein POPTR_0004s03690g [Populus trichocarpa]
12 Hb_000313_190 0.1079508308 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
13 Hb_004242_160 0.1106042945 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
14 Hb_005618_020 0.1115431529 - - hypothetical protein RCOM_1342750 [Ricinus communis]
15 Hb_011287_020 0.1127688149 - - ATP binding protein, putative [Ricinus communis]
16 Hb_032260_100 0.1133101096 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
17 Hb_006648_030 0.1149137613 - - Indole-3-acetic acid-amido synthetase GH3.3, putative [Ricinus communis]
18 Hb_005248_020 0.1156070703 - - hypothetical protein JCGZ_23770 [Jatropha curcas]
19 Hb_001511_270 0.1181198034 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
20 Hb_113396_020 0.118208494 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]

Gene co-expression network

sample Hb_000322_020 Hb_000322_020 Hb_004586_120 Hb_004586_120 Hb_000322_020--Hb_004586_120 Hb_000422_050 Hb_000422_050 Hb_000322_020--Hb_000422_050 Hb_002849_030 Hb_002849_030 Hb_000322_020--Hb_002849_030 Hb_001257_040 Hb_001257_040 Hb_000322_020--Hb_001257_040 Hb_000347_360 Hb_000347_360 Hb_000322_020--Hb_000347_360 Hb_000529_050 Hb_000529_050 Hb_000322_020--Hb_000529_050 Hb_004586_120--Hb_001257_040 Hb_125201_010 Hb_125201_010 Hb_004586_120--Hb_125201_010 Hb_004586_120--Hb_000422_050 Hb_005618_020 Hb_005618_020 Hb_004586_120--Hb_005618_020 Hb_001477_080 Hb_001477_080 Hb_004586_120--Hb_001477_080 Hb_000422_050--Hb_001257_040 Hb_000422_050--Hb_002849_030 Hb_000127_220 Hb_000127_220 Hb_000422_050--Hb_000127_220 Hb_012496_010 Hb_012496_010 Hb_000422_050--Hb_012496_010 Hb_002849_030--Hb_000347_360 Hb_073870_020 Hb_073870_020 Hb_002849_030--Hb_073870_020 Hb_009189_010 Hb_009189_010 Hb_002849_030--Hb_009189_010 Hb_048538_010 Hb_048538_010 Hb_002849_030--Hb_048538_010 Hb_000032_150 Hb_000032_150 Hb_001257_040--Hb_000032_150 Hb_124953_010 Hb_124953_010 Hb_001257_040--Hb_124953_010 Hb_004032_220 Hb_004032_220 Hb_001257_040--Hb_004032_220 Hb_000347_360--Hb_073870_020 Hb_000347_360--Hb_048538_010 Hb_000227_410 Hb_000227_410 Hb_000347_360--Hb_000227_410 Hb_027214_060 Hb_027214_060 Hb_000347_360--Hb_027214_060 Hb_000313_190 Hb_000313_190 Hb_000529_050--Hb_000313_190 Hb_000529_050--Hb_001477_080 Hb_000221_280 Hb_000221_280 Hb_000529_050--Hb_000221_280 Hb_000529_050--Hb_004586_120 Hb_032260_100 Hb_032260_100 Hb_000529_050--Hb_032260_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.70732 2675.9 580.242 516.625 1.3975 0.99955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.20147 7.94588 15.567 7.19296 116.193

CAGE analysis