Hb_000322_080

Information

Type -
Description -
Location Contig322: 98646-102432
Sequence    

Annotation

kegg
ID pda:103713109
description eukaryotic initiation factor 4A-14
nr
ID KDP33852.1
description hypothetical protein JCGZ_07423 [Jatropha curcas]
swissprot
ID Q40467
description Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A0A067KCJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07423 PE=3 SV=1
Gene Ontology
ID GO:0003676
description eukaryotic initiation factor 4a-15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34038: 98656-102352 , PASA_asmbl_34039: 98860-99014
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000322_080 0.0 - - hypothetical protein JCGZ_07423 [Jatropha curcas]
2 Hb_003020_100 0.0557904422 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
3 Hb_001500_100 0.0642101761 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000787_160 0.0690363586 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
5 Hb_102698_010 0.0718285886 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
6 Hb_000046_500 0.0726126438 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
7 Hb_000477_100 0.0798466008 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
8 Hb_000140_290 0.0800695507 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
9 Hb_000017_230 0.0801201502 - - hypothetical protein JCGZ_20558 [Jatropha curcas]
10 Hb_000085_450 0.0803198562 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
11 Hb_001434_080 0.0805540736 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
12 Hb_007481_010 0.0815061642 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
13 Hb_008748_030 0.0825372809 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004705_170 0.0848985739 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
15 Hb_000477_050 0.0851012987 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
16 Hb_000352_300 0.0857514103 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
17 Hb_021165_010 0.0860149526 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
18 Hb_005650_010 0.0860679547 - - ATP binding protein, putative [Ricinus communis]
19 Hb_000345_160 0.0867514857 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
20 Hb_006452_120 0.0874037844 - - PREDICTED: protein FAM188A [Jatropha curcas]

Gene co-expression network

sample Hb_000322_080 Hb_000322_080 Hb_003020_100 Hb_003020_100 Hb_000322_080--Hb_003020_100 Hb_001500_100 Hb_001500_100 Hb_000322_080--Hb_001500_100 Hb_000787_160 Hb_000787_160 Hb_000322_080--Hb_000787_160 Hb_102698_010 Hb_102698_010 Hb_000322_080--Hb_102698_010 Hb_000046_500 Hb_000046_500 Hb_000322_080--Hb_000046_500 Hb_000477_100 Hb_000477_100 Hb_000322_080--Hb_000477_100 Hb_006006_040 Hb_006006_040 Hb_003020_100--Hb_006006_040 Hb_003020_100--Hb_001500_100 Hb_000085_450 Hb_000085_450 Hb_003020_100--Hb_000085_450 Hb_000836_460 Hb_000836_460 Hb_003020_100--Hb_000836_460 Hb_021165_010 Hb_021165_010 Hb_003020_100--Hb_021165_010 Hb_019280_010 Hb_019280_010 Hb_001500_100--Hb_019280_010 Hb_003544_050 Hb_003544_050 Hb_001500_100--Hb_003544_050 Hb_001434_080 Hb_001434_080 Hb_001500_100--Hb_001434_080 Hb_006452_120 Hb_006452_120 Hb_001500_100--Hb_006452_120 Hb_004102_170 Hb_004102_170 Hb_000787_160--Hb_004102_170 Hb_000345_160 Hb_000345_160 Hb_000787_160--Hb_000345_160 Hb_005015_060 Hb_005015_060 Hb_000787_160--Hb_005015_060 Hb_004705_170 Hb_004705_170 Hb_000787_160--Hb_004705_170 Hb_001662_100 Hb_001662_100 Hb_000787_160--Hb_001662_100 Hb_004037_020 Hb_004037_020 Hb_102698_010--Hb_004037_020 Hb_000890_060 Hb_000890_060 Hb_102698_010--Hb_000890_060 Hb_003517_040 Hb_003517_040 Hb_102698_010--Hb_003517_040 Hb_010142_020 Hb_010142_020 Hb_102698_010--Hb_010142_020 Hb_002890_130 Hb_002890_130 Hb_102698_010--Hb_002890_130 Hb_012286_040 Hb_012286_040 Hb_102698_010--Hb_012286_040 Hb_019181_040 Hb_019181_040 Hb_000046_500--Hb_019181_040 Hb_007481_010 Hb_007481_010 Hb_000046_500--Hb_007481_010 Hb_000046_500--Hb_000477_100 Hb_002989_020 Hb_002989_020 Hb_000046_500--Hb_002989_020 Hb_079526_040 Hb_079526_040 Hb_000046_500--Hb_079526_040 Hb_002071_070 Hb_002071_070 Hb_000046_500--Hb_002071_070 Hb_000477_100--Hb_007481_010 Hb_000352_300 Hb_000352_300 Hb_000477_100--Hb_000352_300 Hb_000146_040 Hb_000146_040 Hb_000477_100--Hb_000146_040 Hb_003097_140 Hb_003097_140 Hb_000477_100--Hb_003097_140 Hb_001051_070 Hb_001051_070 Hb_000477_100--Hb_001051_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.5822 18.3684 22.4118 36.2479 11.2135 19.6189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9422 13.9879 19.057 30.4307 21.8992

CAGE analysis