Hb_000322_100

Information

Type -
Description -
Location Contig322: 116046-128138
Sequence    

Annotation

kegg
ID pop:POPTR_0006s15000g
description POPTRDRAFT_831950; casein kinase family protein
nr
ID XP_012076957.1
description PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
swissprot
ID P42158
description Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2
trembl
ID A0A067KNJ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07426 PE=3 SV=1
Gene Ontology
ID GO:0004672
description casein kinase i isoform delta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34045: 116064-127960 , PASA_asmbl_34046: 116065-118544
cDNA
(Sanger)
(ID:Location)		 001_K20.ab1: 120022-127960 , 007_G07.ab1: 119130-127691

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000322_100 0.0 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
2 Hb_000034_050 0.0615192846 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
3 Hb_008695_120 0.0623206816 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
4 Hb_007336_020 0.0632433097 - - Mannose-P-dolichol utilization defect 1 protein, putative [Ricinus communis]
5 Hb_008864_110 0.0678194048 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
6 Hb_031091_010 0.0704152759 - - crooked neck protein, putative [Ricinus communis]
7 Hb_006951_020 0.0705980522 - - Rop3 [Hevea brasiliensis]
8 Hb_004678_060 0.0718964764 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
9 Hb_000976_320 0.0722601072 - - UPF0061 protein azo1574 [Morus notabilis]
10 Hb_009265_080 0.0724565519 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
11 Hb_003581_120 0.0732443518 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
12 Hb_011942_080 0.0733457289 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
13 Hb_005532_050 0.0745849255 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
14 Hb_002400_180 0.0781213469 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002400_470 0.0790184227 - - PREDICTED: calcium uptake protein 1, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_000645_050 0.0809340262 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
17 Hb_008253_010 0.0813449174 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
18 Hb_007590_080 0.0815486236 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
19 Hb_001047_030 0.0825273602 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
20 Hb_002716_140 0.0834970503 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]

Gene co-expression network

sample Hb_000322_100 Hb_000322_100 Hb_000034_050 Hb_000034_050 Hb_000322_100--Hb_000034_050 Hb_008695_120 Hb_008695_120 Hb_000322_100--Hb_008695_120 Hb_007336_020 Hb_007336_020 Hb_000322_100--Hb_007336_020 Hb_008864_110 Hb_008864_110 Hb_000322_100--Hb_008864_110 Hb_031091_010 Hb_031091_010 Hb_000322_100--Hb_031091_010 Hb_006951_020 Hb_006951_020 Hb_000322_100--Hb_006951_020 Hb_002400_180 Hb_002400_180 Hb_000034_050--Hb_002400_180 Hb_009265_080 Hb_009265_080 Hb_000034_050--Hb_009265_080 Hb_001863_110 Hb_001863_110 Hb_000034_050--Hb_001863_110 Hb_003581_120 Hb_003581_120 Hb_000034_050--Hb_003581_120 Hb_000390_060 Hb_000390_060 Hb_000034_050--Hb_000390_060 Hb_008695_120--Hb_003581_120 Hb_008695_120--Hb_031091_010 Hb_001019_170 Hb_001019_170 Hb_008695_120--Hb_001019_170 Hb_008695_120--Hb_002400_180 Hb_002942_160 Hb_002942_160 Hb_008695_120--Hb_002942_160 Hb_007590_080 Hb_007590_080 Hb_007336_020--Hb_007590_080 Hb_002475_160 Hb_002475_160 Hb_007336_020--Hb_002475_160 Hb_011942_080 Hb_011942_080 Hb_007336_020--Hb_011942_080 Hb_001369_180 Hb_001369_180 Hb_007336_020--Hb_001369_180 Hb_008253_010 Hb_008253_010 Hb_007336_020--Hb_008253_010 Hb_003605_130 Hb_003605_130 Hb_008864_110--Hb_003605_130 Hb_002400_470 Hb_002400_470 Hb_008864_110--Hb_002400_470 Hb_000645_120 Hb_000645_120 Hb_008864_110--Hb_000645_120 Hb_000123_090 Hb_000123_090 Hb_008864_110--Hb_000123_090 Hb_001047_030 Hb_001047_030 Hb_008864_110--Hb_001047_030 Hb_000538_100 Hb_000538_100 Hb_008864_110--Hb_000538_100 Hb_001616_090 Hb_001616_090 Hb_031091_010--Hb_001616_090 Hb_002716_140 Hb_002716_140 Hb_031091_010--Hb_002716_140 Hb_031091_010--Hb_003581_120 Hb_007643_050 Hb_007643_050 Hb_031091_010--Hb_007643_050 Hb_000755_030 Hb_000755_030 Hb_006951_020--Hb_000755_030 Hb_006951_020--Hb_001047_030 Hb_002067_120 Hb_002067_120 Hb_006951_020--Hb_002067_120 Hb_007477_080 Hb_007477_080 Hb_006951_020--Hb_007477_080 Hb_003502_080 Hb_003502_080 Hb_006951_020--Hb_003502_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
134.655 65.7055 46.2672 60.5538 121.636 144.121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
84.7415 62.5132 67.2257 34.6816 30.6215

CAGE analysis