Hb_000322_150

Information

Type transcription factor
Description TF Family: TRAF
Location Contig322: 157447-162117
Sequence    

Annotation

kegg
ID rcu:RCOM_1047190
description Regulatory protein NPR1, putative
nr
ID XP_012076961.1
description PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
swissprot
ID P93002
description Regulatory protein NPR1 OS=Arabidopsis thaliana GN=NPR1 PE=1 SV=1
trembl
ID A0A067KFU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07429 PE=4 SV=1
Gene Ontology
ID GO:0005515
description regulatory protein npr1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34052: 157847-159360 , PASA_asmbl_34053: 160241-160404
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000322_150 0.0 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
2 Hb_076693_020 0.0482769666 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
3 Hb_000441_070 0.0629847323 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
4 Hb_002636_100 0.0738862178 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
5 Hb_000092_020 0.0750186285 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
6 Hb_011491_010 0.0754748926 - - Protein YME1, putative [Ricinus communis]
7 Hb_001828_130 0.0758952937 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
8 Hb_005288_010 0.0767028632 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_001005_190 0.0792942307 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
10 Hb_002043_140 0.083842037 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
11 Hb_000236_220 0.0842562919 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
12 Hb_003373_040 0.0859070702 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
13 Hb_093084_070 0.0859478265 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
14 Hb_000169_130 0.0862910156 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
15 Hb_005675_040 0.0896898569 transcription factor TF Family: ERF unnamed protein product [Vitis vinifera]
16 Hb_003055_060 0.0903374195 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105649487 isoform X1 [Jatropha curcas]
17 Hb_004480_040 0.0904206764 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
18 Hb_000592_090 0.0906433031 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Jatropha curcas]
19 Hb_001080_230 0.0911290637 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
20 Hb_001864_060 0.091426906 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000322_150 Hb_000322_150 Hb_076693_020 Hb_076693_020 Hb_000322_150--Hb_076693_020 Hb_000441_070 Hb_000441_070 Hb_000322_150--Hb_000441_070 Hb_002636_100 Hb_002636_100 Hb_000322_150--Hb_002636_100 Hb_000092_020 Hb_000092_020 Hb_000322_150--Hb_000092_020 Hb_011491_010 Hb_011491_010 Hb_000322_150--Hb_011491_010 Hb_001828_130 Hb_001828_130 Hb_000322_150--Hb_001828_130 Hb_045793_010 Hb_045793_010 Hb_076693_020--Hb_045793_010 Hb_076693_020--Hb_000441_070 Hb_023827_040 Hb_023827_040 Hb_076693_020--Hb_023827_040 Hb_000025_360 Hb_000025_360 Hb_076693_020--Hb_000025_360 Hb_006847_040 Hb_006847_040 Hb_076693_020--Hb_006847_040 Hb_000046_010 Hb_000046_010 Hb_000441_070--Hb_000046_010 Hb_001718_090 Hb_001718_090 Hb_000441_070--Hb_001718_090 Hb_004480_040 Hb_004480_040 Hb_000441_070--Hb_004480_040 Hb_000169_130 Hb_000169_130 Hb_000441_070--Hb_000169_130 Hb_002263_040 Hb_002263_040 Hb_002636_100--Hb_002263_040 Hb_008775_040 Hb_008775_040 Hb_002636_100--Hb_008775_040 Hb_000264_320 Hb_000264_320 Hb_002636_100--Hb_000264_320 Hb_002798_070 Hb_002798_070 Hb_002636_100--Hb_002798_070 Hb_000796_180 Hb_000796_180 Hb_002636_100--Hb_000796_180 Hb_000395_130 Hb_000395_130 Hb_000092_020--Hb_000395_130 Hb_001080_230 Hb_001080_230 Hb_000092_020--Hb_001080_230 Hb_000003_190 Hb_000003_190 Hb_000092_020--Hb_000003_190 Hb_003785_040 Hb_003785_040 Hb_000092_020--Hb_003785_040 Hb_000574_540 Hb_000574_540 Hb_000092_020--Hb_000574_540 Hb_000092_020--Hb_011491_010 Hb_001005_190 Hb_001005_190 Hb_011491_010--Hb_001005_190 Hb_011491_010--Hb_001828_130 Hb_007163_120 Hb_007163_120 Hb_011491_010--Hb_007163_120 Hb_000243_250 Hb_000243_250 Hb_011491_010--Hb_000243_250 Hb_001818_070 Hb_001818_070 Hb_011491_010--Hb_001818_070 Hb_001828_130--Hb_002798_070 Hb_001828_130--Hb_000243_250 Hb_001828_130--Hb_002636_100 Hb_012564_030 Hb_012564_030 Hb_001828_130--Hb_012564_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9697 20.7189 6.44529 5.00995 10.0923 12.2687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.60976 10.0366 9.14727 10.4001 5.13147

CAGE analysis