Hb_000322_170

Information

Type -
Description -
Location Contig322: 168682-172876
Sequence    

Annotation

kegg
ID vvi:100267878
description nucleosome assembly protein 1;4-like
nr
ID XP_012076969.1
description PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
swissprot
ID Q70Z18
description Nucleosome assembly protein 1;2 OS=Nicotiana tabacum GN=NAP1;2 PE=1 SV=1
trembl
ID A0A067KFU5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07434 PE=3 SV=1
Gene Ontology
ID GO:0005634
description nucleosome assembly family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34057: 168618-172847 , PASA_asmbl_34058: 169385-172847 , PASA_asmbl_34059: 168656-172270 , PASA_asmbl_34060: 169095-169352
cDNA
(Sanger)
(ID:Location)		 016_B06.ab1: 168658-171363 , 018_F19.ab1: 168658-171530 , 018_K18.ab1: 168658-171362

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000322_170 0.0 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
2 Hb_001178_060 0.0528022297 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
3 Hb_000640_210 0.0702605131 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
4 Hb_005016_030 0.0721201905 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
5 Hb_004032_350 0.0780871988 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
6 Hb_000076_290 0.0788298734 - - translation factor sui1, putative [Ricinus communis]
7 Hb_000174_200 0.085645171 - - PREDICTED: pre-mRNA-splicing factor 38 [Jatropha curcas]
8 Hb_000732_020 0.0872884168 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
9 Hb_000270_450 0.0962414576 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
10 Hb_000264_060 0.0963320541 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
11 Hb_025048_040 0.0968652755 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
12 Hb_012760_200 0.098388106 - - protein phsophatase-2a, putative [Ricinus communis]
13 Hb_183510_010 0.0994582255 - - PREDICTED: RPM1-interacting protein 4-like isoform X2 [Jatropha curcas]
14 Hb_001498_030 0.10243913 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
15 Hb_002149_040 0.102839829 - - conserved hypothetical protein [Ricinus communis]
16 Hb_060437_010 0.1032831723 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
17 Hb_001227_110 0.103577822 - - U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
18 Hb_006173_020 0.1040434224 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
19 Hb_000363_340 0.1040925022 - - PREDICTED: syntaxin-52-like isoform X2 [Jatropha curcas]
20 Hb_001016_060 0.1045379129 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000322_170 Hb_000322_170 Hb_001178_060 Hb_001178_060 Hb_000322_170--Hb_001178_060 Hb_000640_210 Hb_000640_210 Hb_000322_170--Hb_000640_210 Hb_005016_030 Hb_005016_030 Hb_000322_170--Hb_005016_030 Hb_004032_350 Hb_004032_350 Hb_000322_170--Hb_004032_350 Hb_000076_290 Hb_000076_290 Hb_000322_170--Hb_000076_290 Hb_000174_200 Hb_000174_200 Hb_000322_170--Hb_000174_200 Hb_001178_060--Hb_005016_030 Hb_001178_060--Hb_000640_210 Hb_060437_010 Hb_060437_010 Hb_001178_060--Hb_060437_010 Hb_001178_060--Hb_000076_290 Hb_002149_040 Hb_002149_040 Hb_001178_060--Hb_002149_040 Hb_000640_210--Hb_000076_290 Hb_000640_210--Hb_000174_200 Hb_005028_010 Hb_005028_010 Hb_000640_210--Hb_005028_010 Hb_012760_200 Hb_012760_200 Hb_000640_210--Hb_012760_200 Hb_005016_030--Hb_002149_040 Hb_006173_020 Hb_006173_020 Hb_005016_030--Hb_006173_020 Hb_000320_440 Hb_000320_440 Hb_005016_030--Hb_000320_440 Hb_001016_060 Hb_001016_060 Hb_005016_030--Hb_001016_060 Hb_004032_350--Hb_000076_290 Hb_004032_350--Hb_012760_200 Hb_000152_890 Hb_000152_890 Hb_004032_350--Hb_000152_890 Hb_000367_290 Hb_000367_290 Hb_004032_350--Hb_000367_290 Hb_013753_010 Hb_013753_010 Hb_004032_350--Hb_013753_010 Hb_001034_020 Hb_001034_020 Hb_004032_350--Hb_001034_020 Hb_000076_290--Hb_000174_200 Hb_001439_180 Hb_001439_180 Hb_000076_290--Hb_001439_180 Hb_015401_020 Hb_015401_020 Hb_000076_290--Hb_015401_020 Hb_002270_010 Hb_002270_010 Hb_000076_290--Hb_002270_010 Hb_000174_200--Hb_004032_350 Hb_000174_200--Hb_015401_020 Hb_005144_040 Hb_005144_040 Hb_000174_200--Hb_005144_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3891.33 1704.94 238.5 459.05 3484.86 3710.51
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1319.38 1080.46 767.605 406.246 145.013

CAGE analysis