Hb_000322_190

Information

Type -
Description -
Location Contig322: 181725-183861
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000322_190 0.0 - - -
2 Hb_000614_100 0.2388798965 - - 3-oxoacyl-[acyl-carrier-protein] reductase [Populus trichocarpa]
3 Hb_005568_010 0.2523531556 - - -
4 Hb_052941_010 0.2535756013 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
5 Hb_003913_140 0.2662535761 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]
6 Hb_003286_020 0.2665875686 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
7 Hb_001902_120 0.2667998194 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
8 Hb_000042_240 0.2676138122 - - -
9 Hb_002045_200 0.2773267204 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
10 Hb_001741_040 0.280023802 rubber biosynthesis Gene Name: REF3 REF-like stress related protein 1 [Hevea brasiliensis]
11 Hb_005615_050 0.2852752268 - - PREDICTED: uncharacterized protein LOC105636967 [Jatropha curcas]
12 Hb_000856_370 0.2872485369 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
13 Hb_173281_010 0.2888930869 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
14 Hb_001425_050 0.2907561601 - - -
15 Hb_000157_040 0.2980370921 - - PREDICTED: cycloartenol-C-24-methyltransferase [Jatropha curcas]
16 Hb_002450_070 0.3010779079 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
17 Hb_001158_190 0.3025726568 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
18 Hb_000103_110 0.3092016435 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
19 Hb_002326_170 0.31064728 - - Protein Z, putative [Ricinus communis]
20 Hb_010174_070 0.3152124326 - - -

Gene co-expression network

sample Hb_000322_190 Hb_000322_190 Hb_000614_100 Hb_000614_100 Hb_000322_190--Hb_000614_100 Hb_005568_010 Hb_005568_010 Hb_000322_190--Hb_005568_010 Hb_052941_010 Hb_052941_010 Hb_000322_190--Hb_052941_010 Hb_003913_140 Hb_003913_140 Hb_000322_190--Hb_003913_140 Hb_003286_020 Hb_003286_020 Hb_000322_190--Hb_003286_020 Hb_001902_120 Hb_001902_120 Hb_000322_190--Hb_001902_120 Hb_001157_220 Hb_001157_220 Hb_000614_100--Hb_001157_220 Hb_000617_290 Hb_000617_290 Hb_000614_100--Hb_000617_290 Hb_001780_070 Hb_001780_070 Hb_000614_100--Hb_001780_070 Hb_000614_100--Hb_003286_020 Hb_098315_030 Hb_098315_030 Hb_000614_100--Hb_098315_030 Hb_002099_050 Hb_002099_050 Hb_000614_100--Hb_002099_050 Hb_005568_010--Hb_052941_010 Hb_005568_010--Hb_001902_120 Hb_002045_200 Hb_002045_200 Hb_005568_010--Hb_002045_200 Hb_000042_240 Hb_000042_240 Hb_005568_010--Hb_000042_240 Hb_001425_050 Hb_001425_050 Hb_005568_010--Hb_001425_050 Hb_002326_170 Hb_002326_170 Hb_005568_010--Hb_002326_170 Hb_052941_010--Hb_001902_120 Hb_052941_010--Hb_002045_200 Hb_052941_010--Hb_001425_050 Hb_052941_010--Hb_000042_240 Hb_052941_010--Hb_002326_170 Hb_001741_040 Hb_001741_040 Hb_003913_140--Hb_001741_040 Hb_003913_140--Hb_001902_120 Hb_000545_170 Hb_000545_170 Hb_003913_140--Hb_000545_170 Hb_173281_010 Hb_173281_010 Hb_003913_140--Hb_173281_010 Hb_003913_140--Hb_002045_200 Hb_002450_070 Hb_002450_070 Hb_003913_140--Hb_002450_070 Hb_003286_020--Hb_173281_010 Hb_003286_020--Hb_001780_070 Hb_004800_020 Hb_004800_020 Hb_003286_020--Hb_004800_020 Hb_000175_610 Hb_000175_610 Hb_003286_020--Hb_000175_610 Hb_000235_010 Hb_000235_010 Hb_003286_020--Hb_000235_010 Hb_003286_020--Hb_000545_170 Hb_001902_120--Hb_002045_200 Hb_001902_120--Hb_001425_050 Hb_179520_010 Hb_179520_010 Hb_001902_120--Hb_179520_010 Hb_010174_070 Hb_010174_070 Hb_001902_120--Hb_010174_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0945123 0 0.0617751 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.430926 0.225677 0.568507 0 0

CAGE analysis