Hb_000322_200

Information

Type transcription factor
Description TF Family: bHLH
Location Contig322: 213548-216707
Sequence    

Annotation

kegg
ID rcu:RCOM_1047040
description DNA binding protein, putative
nr
ID XP_012077527.1
description PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
swissprot
ID Q9LTS4
description Putative transcription factor bHLH041 OS=Arabidopsis thaliana GN=BHLH41 PE=3 SV=1
trembl
ID A0A067KNI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07416 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh041

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34061: 215163-215426 , PASA_asmbl_34062: 215482-215839
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000322_200 0.0 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
2 Hb_005000_220 0.100034943 - - gulonolactone oxidase, putative [Ricinus communis]
3 Hb_003117_060 0.1153985276 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
4 Hb_106969_010 0.1167123478 - - Cytochrome P450 76C4 [Glycine soja]
5 Hb_007666_040 0.1172923105 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Jatropha curcas]
6 Hb_001953_130 0.1175360025 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
7 Hb_000116_390 0.1235796266 - - Mlo protein [Hevea brasiliensis]
8 Hb_000265_010 0.1244813787 - - amino acid transporter, putative [Ricinus communis]
9 Hb_012053_030 0.1256978489 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
10 Hb_001489_030 0.1283747066 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
11 Hb_002917_030 0.1318050641 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Setaria italica]
12 Hb_003636_010 0.1323993502 - - hypothetical protein CISIN_1g037850mg, partial [Citrus sinensis]
13 Hb_011909_030 0.1327908493 - - hypothetical protein JCGZ_00732 [Jatropha curcas]
14 Hb_001838_010 0.137157796 - - hypothetical protein POPTR_0005s18380g [Populus trichocarpa]
15 Hb_017987_040 0.1376817109 transcription factor TF Family: MYB hypothetical protein POPTR_0002s11440g [Populus trichocarpa]
16 Hb_000300_570 0.1393384198 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
17 Hb_000512_080 0.1440448281 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_000535_030 0.1453986868 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
19 Hb_002400_250 0.1455133595 - - amino acid binding protein, putative [Ricinus communis]
20 Hb_000333_130 0.1474675374 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000322_200 Hb_000322_200 Hb_005000_220 Hb_005000_220 Hb_000322_200--Hb_005000_220 Hb_003117_060 Hb_003117_060 Hb_000322_200--Hb_003117_060 Hb_106969_010 Hb_106969_010 Hb_000322_200--Hb_106969_010 Hb_007666_040 Hb_007666_040 Hb_000322_200--Hb_007666_040 Hb_001953_130 Hb_001953_130 Hb_000322_200--Hb_001953_130 Hb_000116_390 Hb_000116_390 Hb_000322_200--Hb_000116_390 Hb_017987_040 Hb_017987_040 Hb_005000_220--Hb_017987_040 Hb_005000_220--Hb_007666_040 Hb_001489_030 Hb_001489_030 Hb_005000_220--Hb_001489_030 Hb_006106_020 Hb_006106_020 Hb_005000_220--Hb_006106_020 Hb_002917_030 Hb_002917_030 Hb_005000_220--Hb_002917_030 Hb_003117_060--Hb_007666_040 Hb_003636_010 Hb_003636_010 Hb_003117_060--Hb_003636_010 Hb_000535_030 Hb_000535_030 Hb_003117_060--Hb_000535_030 Hb_118777_010 Hb_118777_010 Hb_003117_060--Hb_118777_010 Hb_003385_090 Hb_003385_090 Hb_003117_060--Hb_003385_090 Hb_003117_060--Hb_106969_010 Hb_011909_030 Hb_011909_030 Hb_106969_010--Hb_011909_030 Hb_001838_010 Hb_001838_010 Hb_106969_010--Hb_001838_010 Hb_106969_010--Hb_118777_010 Hb_000333_130 Hb_000333_130 Hb_106969_010--Hb_000333_130 Hb_000345_190 Hb_000345_190 Hb_106969_010--Hb_000345_190 Hb_007666_040--Hb_003385_090 Hb_007666_040--Hb_000535_030 Hb_012053_030 Hb_012053_030 Hb_007666_040--Hb_012053_030 Hb_001114_210 Hb_001114_210 Hb_007666_040--Hb_001114_210 Hb_007666_040--Hb_001489_030 Hb_001953_130--Hb_000116_390 Hb_001953_130--Hb_011909_030 Hb_003253_060 Hb_003253_060 Hb_001953_130--Hb_003253_060 Hb_000031_130 Hb_000031_130 Hb_001953_130--Hb_000031_130 Hb_001953_130--Hb_106969_010 Hb_001953_130--Hb_012053_030 Hb_000116_390--Hb_000031_130 Hb_001376_040 Hb_001376_040 Hb_000116_390--Hb_001376_040 Hb_000116_390--Hb_001114_210 Hb_008616_020 Hb_008616_020 Hb_000116_390--Hb_008616_020 Hb_000185_060 Hb_000185_060 Hb_000116_390--Hb_000185_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.95261 0.265956 0.237732 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0510231 0.0200724 0 2.22251 0.0422739

CAGE analysis