Hb_000325_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig325: 44804-49316
Sequence    

Annotation

kegg
ID rcu:RCOM_1118640
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_002525331.1
description Disease resistance protein RGA2, putative [Ricinus communis]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID B9SH62
description Disease resistance protein RGA2, putative OS=Ricinus communis GN=RCOM_1118640 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance rpp13-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34256: 45684-46239 , PASA_asmbl_34259: 47877-48388 , PASA_asmbl_34260: 48496-48766
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000325_010 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
2 Hb_002477_080 0.114932173 - - hypothetical protein RCOM_0653450 [Ricinus communis]
3 Hb_000816_050 0.117630791 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
4 Hb_014361_040 0.1217767986 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
5 Hb_008092_020 0.1288004121 - - transcription factor, putative [Ricinus communis]
6 Hb_135720_010 0.131025316 - - hypothetical protein JCGZ_17857 [Jatropha curcas]
7 Hb_001728_130 0.1357567303 - - alcohol dehydrogenase, putative [Ricinus communis]
8 Hb_103541_010 0.1367990158 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
9 Hb_000162_070 0.1381874894 - - phospholipase C, putative [Ricinus communis]
10 Hb_000899_060 0.1391462889 - - PREDICTED: uncharacterized protein LOC105793631 [Gossypium raimondii]
11 Hb_002374_520 0.1406426123 - - early nodulin 8 precursor family protein [Populus trichocarpa]
12 Hb_064047_010 0.1426039475 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002598_020 0.1436329272 - - PREDICTED: sugar transporter ERD6-like 5 [Populus euphratica]
14 Hb_002510_100 0.1447853409 - - Root phototropism protein, putative [Ricinus communis]
15 Hb_002811_110 0.1449128762 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
16 Hb_003835_030 0.1453628746 - - glycosyltransferase, partial [Arabidopsis thaliana]
17 Hb_002431_090 0.1454622433 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000090_020 0.146591107 - - acyltransferase, putative [Ricinus communis]
19 Hb_139461_010 0.1468983128 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
20 Hb_136033_010 0.1499081083 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Gossypium raimondii]

Gene co-expression network

sample Hb_000325_010 Hb_000325_010 Hb_002477_080 Hb_002477_080 Hb_000325_010--Hb_002477_080 Hb_000816_050 Hb_000816_050 Hb_000325_010--Hb_000816_050 Hb_014361_040 Hb_014361_040 Hb_000325_010--Hb_014361_040 Hb_008092_020 Hb_008092_020 Hb_000325_010--Hb_008092_020 Hb_135720_010 Hb_135720_010 Hb_000325_010--Hb_135720_010 Hb_001728_130 Hb_001728_130 Hb_000325_010--Hb_001728_130 Hb_000899_060 Hb_000899_060 Hb_002477_080--Hb_000899_060 Hb_001823_070 Hb_001823_070 Hb_002477_080--Hb_001823_070 Hb_002431_090 Hb_002431_090 Hb_002477_080--Hb_002431_090 Hb_002477_080--Hb_000816_050 Hb_103541_010 Hb_103541_010 Hb_002477_080--Hb_103541_010 Hb_000028_460 Hb_000028_460 Hb_002477_080--Hb_000028_460 Hb_064047_010 Hb_064047_010 Hb_000816_050--Hb_064047_010 Hb_050898_010 Hb_050898_010 Hb_000816_050--Hb_050898_010 Hb_000816_050--Hb_002431_090 Hb_002272_070 Hb_002272_070 Hb_000816_050--Hb_002272_070 Hb_000162_070 Hb_000162_070 Hb_014361_040--Hb_000162_070 Hb_026144_040 Hb_026144_040 Hb_014361_040--Hb_026144_040 Hb_007237_080 Hb_007237_080 Hb_014361_040--Hb_007237_080 Hb_002097_080 Hb_002097_080 Hb_014361_040--Hb_002097_080 Hb_000045_080 Hb_000045_080 Hb_014361_040--Hb_000045_080 Hb_014361_040--Hb_001728_130 Hb_003835_030 Hb_003835_030 Hb_008092_020--Hb_003835_030 Hb_174101_010 Hb_174101_010 Hb_008092_020--Hb_174101_010 Hb_001013_050 Hb_001013_050 Hb_008092_020--Hb_001013_050 Hb_008092_020--Hb_000028_460 Hb_002000_130 Hb_002000_130 Hb_008092_020--Hb_002000_130 Hb_000472_020 Hb_000472_020 Hb_008092_020--Hb_000472_020 Hb_135720_010--Hb_001728_130 Hb_007625_030 Hb_007625_030 Hb_135720_010--Hb_007625_030 Hb_029866_080 Hb_029866_080 Hb_135720_010--Hb_029866_080 Hb_032260_130 Hb_032260_130 Hb_135720_010--Hb_032260_130 Hb_139461_010 Hb_139461_010 Hb_135720_010--Hb_139461_010 Hb_000095_070 Hb_000095_070 Hb_001728_130--Hb_000095_070 Hb_005545_110 Hb_005545_110 Hb_001728_130--Hb_005545_110 Hb_164117_010 Hb_164117_010 Hb_001728_130--Hb_164117_010 Hb_073808_010 Hb_073808_010 Hb_001728_130--Hb_073808_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0921967 1.45933 0.364116 2.27938 0.0250305 0.0239508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.928401 0.765223

CAGE analysis